barSeed - Barley Seed Development Database

Probe CUST_32117_PI390587928

Source Contig U35_47423

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32117_PI390587928	Hv_44K_v2	ACATTTCAGACAGCAGCATGACTTATAAAAGTGAATGGAGGGAGTAGTTCTTGTGGCAAA	14	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.957	2.595	1.316	0.826	0.483	0.575
Raw	507.195	679.700	310.914	301.904	62.097	80.774

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249995.1	1770	2e-24	1692 - 1751	100	60 / 60	plus	ABC09188 ABC48477
JLOC1	JLOC1_9490.4	1480	8e-25	1226 - 1285	100	60 / 60	plus
JLOC1	JLOC1_9490.3	1618	8e-25	1364 - 1423	100	60 / 60	plus
JLOC1	JLOC1_9490.2	1558	8e-25	1304 - 1363	100	60 / 60	plus
JLOC1	JLOC1_9490.1	1621	8e-25	1367 - 1426	100	60 / 60	plus
Harvest21	ABC48477	548	3e-25	15 - 74	100	60 / 60	minus	ABC48477
Harvest35	U35_47423	548	3e-25	15 - 74	100	60 / 60	minus
Harvest35	U35_17410	2149	6e-22	1632 - 1691	97	58 / 60	plus

Contig Sequence (548 bp)

>U35_47423 548 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCCACAAGAACTACTCCCTCCATTCACTTTTATAAGTCATGCT
GCTGTCTGAAATGTCTACAGGACCTTATAGAAGTGAACAGAGGGAGTACATCATTTAACT
TTTTTATAGAAATACTACATCATTTAACTAAAACGAGGTGAGAATGGCAGGGAGTACATC
ATTTAACTTTTTTATAGAAATACTACATCATTTAACTAAAACGAGGTGAGAATGGCAGGG
GTCAATAGCCAGGCACAATTACATTCCGAAGACAGCAGGCTGCATAAGACTGTTTCATCA
AAGAGGAATACCAGTAGCCAGGCTGCCATACCTGCGGGATTATCAGTTAGCAACGACAGG
AGAGATGCTCCTGCGTATCATGCTACATAGGCTCGCGGCCTTCTAGAACTGAAATTCGCG
ATGAATATATCTTTACACATCTGTAGAAGCAGAATGAATCGCCTCATGCTCGGCATCCAG
GCCACTTAACCTCCTGCTTGGTTTATCAGACTTGGAGAAGTGCTTAGACATGATGGACGC
CTGCTCTT

Homology of Contig U35_47423 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None