barSeed - Barley Seed Development Database

Probe CUST_32116_PI390587928

Source Contig U35_11495

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32116_PI390587928	Hv_44K_v2	CGGAAAATCGTGGGATAATATTGAAAATGCTGGTAGTGAACAGGATGTGGACCTTATGAA	357	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.270	1.421	1.532	0.853	0.439	0.370
Raw	673.357	1152.871	1091.128	903.110	173.011	161.220

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373790	4303	7e-23	1534 - 1593	98	59 / 60	plus	ABC10886
MLOC	MLOC_51380.4	1742	7e-23	45 - 104	98	59 / 60	plus	ABC10886
MLOC	MLOC_51380.1	1998	7e-23	228 - 287	98	59 / 60	plus	ABC10886
MLOC	MLOC_51380.3	1646	7e-23	50 - 109	98	59 / 60	plus	ABC10886
MLOC	MLOC_51380.2	1719	7e-23	50 - 109	98	59 / 60	plus	ABC10886
JLOC1	JLOC1_32823.1	1847	4e-23	187 - 246	98	59 / 60	plus
Harvest35	U35_11495	421	3e-25	358 - 417	100	60 / 60	plus

Contig Sequence (421 bp)

>U35_11495 421 Hv_44K_v2
GGGTCCTGCTGATTCTAATGCAGAGGAAACCATAAATACACTCAAGTATGCCAATCGTGC
ACGGAATATTCAAAATAAAGCAGTGATCAACAGAGACCCAGTTACAGCAGAGATGCAAAA
ATTGAGGAGTCAAGTAGAGCAGCTCCAGAGTGAACTTCTGTTTTCCCGCAGTGGGGGTGC
ATCACTAGAAGAATTTCAGTTGCTGCAACAAAAAGTCTCTCTACTTGAGTTAAAAATTTC
AGAACTTTACTGTGAGCTCAAGGAAAGGGAAATGTCTTGTGAACAGTTAGCACAGCGTGC
AGTTGCTGCCCAGCTGGAAAGGGATCAGCTGATGTTAAAGCTCGAATCAGCACGCAACGG
AAAATCGTGGGATAATATTGAAAATGCTGGTAGTGAACAGGATGTGGACCTTATGAAGAG
C

Homology of Contig U35_11495 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g24560.1	1233	6e-74
Arabidopsis v10	None