barSeed - Barley Seed Development Database

Probe CUST_32114_PI390587928

Source Contig U35_11496

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32114_PI390587928	Hv_44K_v2	ACTAAGTTTCAAGTATTCGAGGGAGCTGTCAAGGACGAGCAGGGGTGGCAGCTTCCGCTC	48	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54963.4	4206	2e-24	2035 - 2094	100	60 / 60	plus	ABC07977 ABC07979 ABC16427
MLOC	MLOC_54963.2	4470	2e-24	2369 - 2428	100	60 / 60	plus	ABC07977 ABC07979 ABC16427
MLOC	MLOC_54963.3	4317	2e-24	2103 - 2162	100	60 / 60	plus	ABC07977 ABC07979 ABC16427
MLOC	MLOC_54963.5	3570	2e-24	1426 - 1485	100	60 / 60	plus	ABC07977 ABC07979 ABC16427
MLOC	MLOC_54963.1	4837	2e-24	2693 - 2752	100	60 / 60	plus	ABC07977 ABC07979 ABC16427
JLOC1	JLOC1_35421.1	4478	8e-25	2232 - 2291	100	60 / 60	plus
Harvest21	ABC25686	641	3e-25	49 - 108	100	60 / 60	plus
Harvest35	U35_11496	641	3e-25	49 - 108	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_11496 641 Hv_44K_v2
GCTTCAGCACAAGCCCTCTTTCTCTCATAGCACAAGCATCACCAGGCCACTAAGTTTCAA
GTATTCGAGGGAGCTGTCAAGGACGAGCAGGGGTGGCAGCTTCCGCTCCGACAAGGACTC
GATAAGCCGGTACGGCGCGGCGGAGCTGAACGACGAAGGGCACAGCAAGGGGAAGCCCGT
CTCGATGAAGAAGCTCTACTCCATGGTGCGGCCGGACTGGGTGTTCGGCGTGTCGGGCAC
CATCAGCGCGTTCGTGGCCGGCGCCCAGATGCCGCTCTTCGCCCTGGGCGTGACGCAGGC
GCTCGTGTCATACTACATGGGGTGGGAGACCACCAAGAGGGAGGTGCGCAAGATCGCCAC
GCTCTTCTGCTGCGGCGCCGTGCTCACCGTGGTGTTCCACGTGATCGAGCACCTCAGCTT
CGGCATCATGGGCGAGCGGCTCACGCTGCGCGTCCGGGAGAAGATGTTCGCCGCCATCCT
GCGGAACGAGATCGGGTGGTTCGACAGCACCAGCCACACAAGCGCCATGCTGGCGTCGCG
GCTCGAGACCGACGCCACGCTGGTGCGCACCATCGTCGTCGACCGCTCCACCATCCTGTT
GCAGAACGTCGGCATGATCGTCACGTCGCTCATCATCGCCT

Homology of Contig U35_11496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46680.1	1265	1e-118	protein\|multidrug resistance protein, putative, expressed
Brachypodium v1_2	Bradi3g52220.1	1257	3e-122
Arabidopsis v10	AT4G25960.1	1273	5e-80	\| Symbols: PGP2 \| P-glycoprotein 2 \| chr4:13177438-13183425 FORWARD LENGTH=1273