- Probe CUST_32113_PI390587928
- Source Contig U35_11497
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32113_PI390587928 | Hv_44K_v2 | GCTCGACGCCCTCCTCCTGCTCGACGCCTACTGCGCGCTCCTCGCCGACCGCTCGGCGCT | 278 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.330 | 0.467 | 1.074 | 1.038 | 1.473 | 1.701 |
| Raw | 436.688 | 915.778 | 1914.793 | 2352.320 | 1413.830 | 1793.517 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK370210 | 1280 | 2e-24 | 290 - 349 | 100 | 60 / 60 | plus | ABC30472 |
| MLOC | MLOC_3860.1 | 209 | 2e-24 | 54 - 113 | 100 | 60 / 60 | minus | None |
| Harvest21 | ABC25660 | 538 | 3e-25 | 279 - 338 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11497 | 538 | 3e-25 | 279 - 338 | 100 | 60 / 60 | plus |
Contig Sequence (538 bp)
>U35_11497 538 Hv_44K_v2 GGCCACCTTCCACCTTCCAAAACCGGCAGCACCAGAGCTAGTCGGCGCGACTCGTCGGCG ATGGGGAGGACGCTGGACGTGCTGCTGGGGCGGACAACGAAGCAGACGGCGCGGCTGAGG TCGCTGCTGCACCTCGCCACGAGGCGGGTCGCCGTGGTGCGCGCGCACCGGGAGGTGCGG TGCGCGCAGGCGCGGGGGGACGTGGAGCAGCTGCTCCGGCAGGGCCACCCGGACCGGGCG CTGCTGCGGGCCGAGCAGGTGATCCGGGAGCGGGACACGCTCGACGCCCTCCTCCTGCTC GACGCCTACTGCGCGCTCCTCGCCGACCGCTCGGCGCTGCTCGACGCGGCGCACGGCCGG GAGTGCCCGGCCGAGCTGCGGGAGGCGGCGGCGGGGCTCTGCTACGCCGCCGCGCGCTGC GGGGACCTCCCCGAGCTGCAAGAGGCCCGCGCCCTCCTCGCCGCCAAGTTCGGCCGCGGC TTCGCGTCCGGCGCCGCCGAGCTCCGCGGCGGCTGCGGCGTCAGCGCCAAGCTCGTGC
Homology of Contig U35_11497 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |