barSeed - Barley Seed Development Database

Probe CUST_32110_PI390587928

Source Contig U35_11498

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32110_PI390587928	Hv_44K_v2	ACTATTGCTCTGTGGTGTATAAGTTCGAGTTGCCATCCCAATATTTTCTTTGTGAAAAAA	525	GeneList: bisque4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.802	3.927	2.448	0.428	0.257	0.229
Raw	48.262	171.486	89.564	25.174	2.757	2.774

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368173	994	7e-23	891 - 947	100	57 / 57	plus	None
MLOC	MLOC_18101.1	715	7e-23	291 - 347	100	57 / 57	minus	None
JLOC1	JLOC1_12517.1	544	4e-23	120 - 176	100	57 / 57	minus
Harvest35	U35_11498	596	3e-25	526 - 585	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_11498 596 Hv_44K_v2
TCGGCGGAGAGGACCGGACAGAGTCGGAGAAAGCACTGGAGGGCGTGGCCCCGATCGTCA
ACCTCCGCCGGTCCGACTTCTGGTGGAAGGCGTTCTTGCCGGAGGGCGCCGACCGGAACC
ACCCGGCCGCGCACGTGACGGGCGAGGCAGGCCCGGAGCCGGAGCTGCCGGATGCGTTCC
CGCCGGCGATGGTGGTGGTCGGCGGGCTCGACCCGCTACAGGAGTGGGGGCGGCGGTATG
CCGCCATGCTGCGCCGGAAGGGCAAGGAGGTGCGCGTGGTGGAGTTCACGGAGGCTGTAC
ACGCCTTCTACTTCTTTCCGGCGCTGCCCGACACCGGCAAGCTCGTCGGGGAGATCAGGG
CGTTCGTGGAGAGCATCGCGCCTAGGTCGACCGCGTAGTGAACTGGAGACGATGATCGCG
ACCACTCGTCGTGGATGCCGTGGTGCATGTGGCTCTGCTAATGTATCTTGTTGGATGGTA
GCCTGTTTCACTGTCAAAGTCGGTGCGAGCAGCCGCGTCCGTTAAACTATTGCTCTGTGG
TGTATAAGTTCGAGTTGCCATCCCAATATTTTCTTTGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_11498 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g20200.1	361	8e-67	protein\|gibberellin receptor GID1L2, putative, expressed
Brachypodium v1_2	Bradi1g17780.1	346	2e-71
Arabidopsis v10	None