barSeed - Barley Seed Development Database

Probe CUST_32102_PI390587928

Source Contig U35_23474

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32102_PI390587928	Hv_44K_v2	TTTCCTGGAGGAAAAACATCAGTTTCTTGTTCGCAAGATATACTTTTCTGTATCTTACGT	610	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.084	2.053	1.219	0.722	0.305	0.344
Raw	3806.277	5945.783	3034.103	2807.232	416.693	512.652

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13417.3	1047	7e-23	907 - 966	98	59 / 60	plus	None
Harvest21	ABC51120	415	1e-23	313 - 372	98	59 / 60	plus
Harvest35	U35_23474	713	3e-25	611 - 670	100	60 / 60	plus

Contig Sequence (713 bp)

>U35_23474 713 Hv_44K_v2
CAATGTGAGCACCAAAGGATTTACTTCTTTTTTCTCGAGAGTACGCCAATGACGTACCAT
ACTTGTATAGAAGGAAGCAACAATATTTAAAAGAGAACCAAGCACCTTGCGAACAAGAGC
TTGGTCAAACACCAACACCCACACCTATGAAAAACTAAAGCCTACTCTCTCGCTAATCTA
TCTAGACTTCCAGCTCCGGCCTTCCTCCACTCATCAATCTCGTCGATTATCATCATCTTG
AGCTGAGCGGGATCCACCTGTTGTGCCAGCGGCCGCTCAAGATGGAGCCGTATGCTTACT
GGCCTTTGGATCGTAAGCTGCTCAACCGCAGGTCGGATCGCAAGCAGTCCGCACGCAAGG
GCATGGCCAGTGTCATGAAGATGGCGAAAAGGTTTGAGGGGAAGAGCGCTTCGGGTGCCC
TCGCAGCCAAGAGGACACAAAAACATAAGCAGAAGAAGAACAAGTGATAGACTTGAGGAG
TGTAGGGAATTTTTGTAACTGTACAGTGAGGGTTTAGCTAGCACTAGTTGCGCTTGTTGG
GGCGTATTTATGCTGGTGCCGTTTCTCTGGGTTTTTTCCTGAAGGAAAATTTTGACTGCT
TCTCCGGTTTTTTCCTGGAGGAAAAACATCAGTTTCTTGTTCGCAAGATATACTTTTCTG
TATCTTACGTTTTTTGTACTTCCAGAATCAGATTGACTGAAATGTGTTGTAAT

Homology of Contig U35_23474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None