barSeed - Barley Seed Development Database

Probe CUST_32096_PI390587928

Source Contig U35_42822

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32096_PI390587928	Hv_44K_v2	TGTTCAATCCCTCCTCGTCGCGTCTGGTACCATTCTGAACGAGATTCTTATTTGGAAACT	495	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9793.3	4045	2e-24	406 - 465	100	60 / 60	plus	ABC25200
MLOC	MLOC_9793.2	4344	2e-24	408 - 467	100	60 / 60	plus	ABC25200
MLOC	MLOC_9793.1	4309	2e-24	425 - 484	100	60 / 60	plus	ABC25200
JLOC1	JLOC1_6353.4	4295	8e-25	368 - 427	100	60 / 60	plus
JLOC1	JLOC1_6353.3	4325	8e-25	394 - 453	100	60 / 60	plus
JLOC1	JLOC1_6353.2	4343	8e-25	408 - 467	100	60 / 60	plus
JLOC1	JLOC1_6353.1	4339	8e-25	408 - 467	100	60 / 60	plus
Harvest21	ABC38757	559	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_42822	559	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_42822 559 Hv_44K_v2
GGGCGCCGGCGCCGGCCTGCGGCTGGGCTCCTACCTCGGCGACGTCTCCGCGCTCTCCTT
CCTCCCCTCCTCCCCGCGCCCCCTCCTCCTCGCCGGGACCGGGTCGGAGCTGCTCGTCTA
CGACCTGGATGCCGCCAGGCTCGTCGCCTCCTTCCGGGTCTTCGACGGCGTGCGCGTCCA
CGGCATCCAACCCCGCGTCCGTGCCCCCAATGGCCCCGCCGACGGGCTCACCGTCGCCGT
GTTCGGCGAGAGGAGGGTGAAGCTCCTCAGCCTCCGCGTCGACGCGGCCGGCGTGCTGCT
GCAGCTGGAGCAGAGGCTCCCCGGGTTCGACCACTGGGTGCTCGACGCTTGCTTCCTCGA
GGTCGACGGGCTGCTTGCGATCGGTTTGGGCGACAATTCAGTGGCCTTGTGGGATTTGAA
GGACCGTGTGTTCGTTACCAGGGTGAATTCTCCAGAGAAGTGCCTTCTGTATTCAATGAG
AATGTGGGGGGACTCTGTTCAATCCCTCCTCGTCGCGTCTGGTACCATTCTGAACGAGAT
TCTTATTTGGAAACTGGTA

Homology of Contig U35_42822 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02110.2	1316	6e-80	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g77780.1	1343	8e-80
Arabidopsis v10	None