barSeed - Barley Seed Development Database

Probe CUST_32085_PI390587928

Source Contig U35_28536

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32085_PI390587928	Hv_44K_v2	TTGATGTACAGCTGATTGGTGGGATGGTTCTGCATAAGGGGGAGATTGCAGAAATGAACA	267	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355166	4504	2e-23	492 - 549	100	58 / 58	plus	ABC14078
MLOC	MLOC_64060.1	876	2e-23	456 - 513	100	58 / 58	minus	None
JLOC1	JLOC1_42020.1	707	1e-23	194 - 251	100	58 / 58	plus
Harvest21	ABC27481	390	3e-25	268 - 327	100	60 / 60	plus
Harvest35	U35_28536	390	3e-25	268 - 327	100	60 / 60	plus

Contig Sequence (390 bp)

>U35_28536 390 Hv_44K_v2
GCCCCGCACTGGGGGGATTGCTGGGCGGCATGTTCGGCGGCGGCGGCGGTGACGACGGGG
AGGTAGCGAGGAGGAGGTACAACGACAACGTCGCGCTAGTTAACAAGCTGGAGCCCGAGG
TCTCCGCGCTCTCGGACGCTGACCTCCGCGCCCGCACCTCCGTGCTGCAGGAGCGCGCGC
GCGCCGGGGAATCACTCGACTCCCTCCTCCCCGAAGCATTTGCTGTTGTGAGGGAGGCTT
CCAATAGAGTTCTTGGTCTTCGCCCCTTTGATGTACAGCTGATTGGTGGGATGGTTCTGC
ATAAGGGGGAGATTGCAGAAATGAACACTGGTGAGGGGAAGACACTCGTGGCTATCCTGC
CAGCGTACTTAAATGCATTAAGTGGGAAAG

Homology of Contig U35_28536 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g21820.1	1016	3e-55	protein\|preprotein translocase subunit secA, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g12067.1	1000	2e-56
Arabidopsis v10	None