- Probe CUST_3207_PI390587928
- Source Contig U35_22933
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3207_PI390587928 | Hv_44K_v2 | CGCTGTCTATAAATGGTGGACTATAAAATGTTTAAGGGTCAATCCCATATATGCCAAAAA | 386 | GeneList: saddlebrown MasterList: Pathogenesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.564 | 2.079 | 1.856 | 1.973 |
| Raw | 27.948 | 37.731 | 5599.707 | 29953.467 | 9744.550 | 11397.310 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_62582.1 | 1081 | 3e-22 | 1012 - 1067 | 100 | 56 / 56 | plus | ABC17906 |
| JLOC1 | JLOC1_40964.2 | 1202 | 1e-22 | 1134 - 1189 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_40964.1 | 860 | 1e-22 | 792 - 847 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC17906 | 457 | 3e-25 | 386 - 445 | 100 | 60 / 60 | plus | ABC17906 |
| Harvest35 | U35_22933 | 458 | 3e-25 | 387 - 446 | 100 | 60 / 60 | plus |
Contig Sequence (458 bp)
>U35_22933 458 Hv_44K_v2 TTTCCAGCACAGGACCAGGGGAAAGGACCCGAGCATGAACCCAAGCTTTGACGCGCAGCT CCAGGGCACCTGTGCCAGGCAAAACTTCGCATTCCTGGACGACGTGACACCGGTGGGATT TGACAACTTGTACTTCCAGCACCTGCAGAACGGCAGGGGCCTCCTGGGATCCGACCAGGT GTTGTACACAGACGAGAGATCACGCGGCACCGTGGACTACTACGCGTCCAACCAGGGCTT CTTCTTCTATGACTTTAGCGTCGCCATGACAAAGCTTGGCAGGGTAGGGGTCAAGACTGC CGCTGACGGCGAGATACGCCGTGACTGTCGGTATCCAAATTAGATACTTGTATGGCCTCA GAAGATTTCTCATTGTCTGAACATATCGCTGTCTATAAATGGTGGACTATAAAATGTTTA AGGGTCAATCCCATATATGCCAAAAAAAAAAAAAAAAA
Homology of Contig U35_22933 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g33730.1 | 315 | 7e-51 | |
| Arabidopsis v10 | None |