barSeed - Barley Seed Development Database

Probe CUST_32075_PI390587928

Source Contig U35_16562

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32075_PI390587928	Hv_44K_v2	CCCTCCCCTGGCAACAGTTTGAATAGAATGTTAATGTAACAATAGTAGTGTAAAATTGTA	1244	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365690	3470	2e-24	3220 - 3279	100	60 / 60	plus	ABC11445
MLOC	MLOC_13833.2	3412	2e-24	414 - 473	100	60 / 60	minus	ABC11445
JLOC1	JLOC1_9405.2	2686	8e-25	2195 - 2254	100	60 / 60	plus
Harvest21	ABC11445	1614	3e-25	311 - 370	100	60 / 60	minus	ABC11445
Harvest35	U35_16562	1614	3e-25	1245 - 1304	100	60 / 60	plus
Harvest35	U35_16563	1808	5e-23	1309 - 1367	98	59 / 60	plus

Contig Sequence (1614 bp)

>U35_16562 1614 Hv_44K_v2
CCTCTTATCATCATAGTCAACCACCACATAATACAAAAGATATTAGAGGTGCAACAGATA
CTCTTGAAGTTAGGCCATTCATCAGGCATGGAATCAATTCATCTGTATTTGTTCCTCGAC
ATCTATATGATGCATTGGATCGGAAAACTGTAAGTTCTGGTAACTTAGCCCAACCACCAT
ACCACCACCCAGATTTGTTGTCATCGAGTCAACAAAATCAAGGTACAAATTTTGGAAATC
AATCTCAGCCTCATGATGTGCCACAGTTTCATCCTCATTCCCATTCCCACTCTCCGGAGG
TATTTAGAAGCTTTGCCCCCAGCATGCCTGTAGCTCCCCCCCAAAATCCATTCCAAGGAC
AAGGAGGTAGTGCAGTAGTACCACCAGTTCCACCTCTACCAAACACCTTTTCTGCAACAC
GAACTGTGCAACCCTATGGCGTGTCGTCAGCGTCTAGTTTTGCTCTGCCACCGTTACATC
GTAGCCTACCTCCTGCTTCGTTGCAGATTGGTCCATCTTCATCACAAGTTTGTGGGCCTA
CAACATATTTCTCTGGAATTTTAAGTAACCTTATGAATCATGGTGTAATTACACTGGAGC
CAGCTACTCAACCTCAGGACTCTGTTGGAGTTGACTTCAATGTAGACCTCAAGGTGCGGA
ACGAGTCTGTCATTAATGCTCTGTATCAGGATCTCCACAGGCAATGCAAAACGTGTGGCC
TTCGTTTTAAATGCCAGGAAGAGCACCGTGCTCATATGGATTGGCATGTTACGAAAAACA
GAAATTCCAAAAATCGCAAGCAATCTTCACGTAAATATTTTGTCACCGTGGGGGAATGGT
TAAGAGCAGCAGAAACAGTAGGAAATGATGGTGTTCCTTCTTTTGAGCCCACGGAACCAA
TTCCCGACAAAAAGGAAGAAAAAGAAATGTCTGTTCCTGCCGATGAAAACCAAACAACAT
GTGCTTTATGTCAAGAGCCATTTGAGGATTTCTACAGCGATGAAACTGAAGAGTGGATGT
ACAAAGGTGCAGTTTACATGAATGCACCTGATGGTAATATTGTTGGTCTCCAAAGGTCGC
ATTTGGGGCCTATTGTCCATTCCAAATGTCAATCTGGCCCCAGTAATATTTCTTAGGTGG
GCGTAGCTGGAACCCTTGCCCCATTATTTCAGTTTCTTTGGTTGCGGCTAGACAAGACAT
GTAAAATTACTGGAGAAATCACATTTTGGTATGCTTAGTTTCCCCCCTCCCCTGGCAACA
GTTTGAATAGAATGTTAATGTAACAATAGTAGTGTAAAATTGTAAAATACTTGTGTTTTA
GTGATGGAGCATGAGTAACTTGCTCTGCTGTTGCCATGGTGTGTGCCCTATTATTTCTAG
CCCTTTCACAGTTGTAGCATGGTGCTTTTACAATAACAATATGGAATCCTCTTAATCTAG
GATGACATGCAACCAAAAAAAAAAAATCGGAGTCATATGGACTACCGATTTCATGAACAG
GCGAAACAAACATGCTCCTGCCCTTTTCTTGTTCCCTTCCTCTGCAATCTCACATGCAGG
ACAATGTCAGCCCATCAGTGTGCTGGTAACTTCCGAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_16562 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08830.1	972	1e-178	protein\|expressed protein
Brachypodium v1_2	Bradi3g15320.1	937	0.0
Arabidopsis v10	AT4G04885.1	808	3e-75	\| Symbols: PCFS4 \| PCF11P-similar protein 4 \| chr4:2472083-2475417 FORWARD LENGTH=808