barSeed - Barley Seed Development Database

Probe CUST_32073_PI390587928

Source Contig U35_16563

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32073_PI390587928	Hv_44K_v2	CTGTACGTCTTTGCATTGTAACAGTATCGTGACAATAAATTCTTGGTCGATTGTGTAAAA	1735	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.236	1.120	1.176	1.038	0.392	0.334
Raw	289.191	419.951	380.505	523.867	70.308	63.963

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13833.1	2475	2e-23	9 - 66	100	58 / 58	minus	ABC11445
JLOC1	JLOC1_9405.2	2686	1e-23	2623 - 2680	100	58 / 58	plus
Harvest35	U35_16563	1808	3e-25	1736 - 1795	100	60 / 60	plus

Contig Sequence (1808 bp)

>U35_16563 1808 Hv_44K_v2
TCGTCATGGCACAGAAATTCACTGTTTGAAGGAGCATGGCAAAGCGCTGAAACTTCAGTT
CCTGGATAAACACTTCCTCTTGGCATCGATAAACAGCTTCGGGCAGCTCCACTACCAAGA
TATGAGCACCGGCGAGATGGTTGCGAATCACAGGACAGGTCTTGGGCGTACTGATGTTAT
GCGGGTAAATCCGTACAACGCTGTCATTGGCCTTGGGCATGCTGGTGGCAAAGTTACCAT
GTGGAAGCCAACCAGTGTGAAACCACTTGTCACAATGCTTTGCCATAATGGCCCTGTGAC
TGCTGTTGCATTCGAGAGGGGCGGTCATCTTATGGCAACTGCAGGTGTTGACAAGAAGAT
TAAGATTTGGGATCTCAGGAAGTATGAGGTTGTGCGTACACACCATGCACGAGCTGAGTC
CTTGGATTTCAGCCAGAAGGGGTTGTTGGCCGCCAGTAATGGATCTCTAGTAGAGGTATA
CAGGGATGCTGGGGGCCATGATTATAAAATTTACATGAAGCATAGGATGGTAAAGGGATA
TCAGATCGGTAAGGTTTTGTTCCGCCCTTACGAGGATATCTGTTCGATTGGGCACTCCAT
GGGGTTTTCTTCCATTCTCGTTCCTGGATCAGGCGAGGCGAACTTTGATACCTTTGTCGA
GAACCCTGTGGAGACTGCCAAGCAAAGGAGGGAGAGGGAGGTGCATGCTCTCCTCAACAA
GCTTCAGCCGGAGACTGTTATGCTTAACCCAAACATGATCGGTAACGTGAGGCAGCCAAA
AAAGAAAGAGAAGAAGACCAAAAAGGAAGTCGAGGAGGAGATTGAAGATGCCGTGGAGGC
TGCCAAGAGCACGAAGGTGAAGAACAAGACCAAGGGCAGGAGCAAACCCAGCAAGCAGGC
AAAGAAGAAGGAAGAAGAGGTCCTCAGAGCCAAGAGGCCTCTACTGGACCAGTACAAGGA
AATCGGCGGGAATCCTGAGAAGAAACAGCGGGTAGGCGACAAGGCCGAGCTGCCGAAGGC
CCTGCAGCGGTTTGCCAAGAACAAGCAATCATGATCTTGTTTATCTAGCAGCTTGTGTTG
TAGTATCGTCTATCATGTAGCTGGTAAGTAGTATTTGAGTCCATGTGGACATGCCACGTG
AGACAACGGTGGGAAAGGACGCAGCAAATTTTTGTCCCCAAATAACTTGTGTTCTAGTTG
AAATTTAGCTCGTTTAGCGGCCGCTCATTATTTCAGTTTCTTTGGTTGCGGCTAGACAAG
ACATGTAAAATTACTGGAGAAATCACATTTTGGTATGCTTAGTTTCCCCCCTCCCCTGGC
AACAGTTTAATAGAATGTTAATGTAACAATAGTAGTGTAAAATTGTAAAATACTTGTGTT
TTAGTGATGGAGCATGAGTAACTTGCTCTGCTGTTGCCATGGTGTGTGCCCTATTATTTC
TAGCCCTTTCACAGTTGTAGCATGGTGCTTTTACAATAACAATATGGAATCCTCTTAATC
TAGGATGACATGCAACCCTTGAGTTTAGGTCGGAGTCATATGGACTACCGATTTCATGAA
CAGGCGAAACAAACATGCTCCTGCCCTTTTCTTGTTCCCTTCCTCTGCAATCTCATATGC
AGGACAATGTCAGCCCATCAGTGTGCTGGTAACTTCCGAGAAAACCCAAACAGCTCTCCT
ATACTATTTATAGATGAGCAAGATGTTGCTGTTATTTTCTTTGGTGCATCTTTCACTGTA
CGTCTTTGCATTGTAACAGTATCGTGACAATAAATTCTTGGTCGATTGTGTAAAAAAAAA
AAAAAAAA

Homology of Contig U35_16563 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08770.1	535	0.0	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g14400.1	532	0.0
Arabidopsis v10	AT3G10530.1	536	3e-130	Transducin/WD40 repeat-like superfamily protein \| chr3:3286277-3288670 FORWARD LENGTH=536