barSeed - Barley Seed Development Database

Probe CUST_32064_PI390587928

Source Contig U35_42830

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32064_PI390587928	Hv_44K_v2	GCTATGTTGATCCTGAGGTGATTTGTCCAGCATTGAATGTGCTTGTCAATCTTGTATGCC	511	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61272.1	6162	2e-24	3396 - 3455	100	60 / 60	minus	ABC08399
JLOC1	JLOC1_40038.1	6097	8e-25	2721 - 2780	100	60 / 60	plus
Harvest21	ABC38767	658	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_42830	658	3e-25	512 - 571	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_42830 658 Hv_44K_v2
CGCGAATAAGGGAATGACCGATCACCTGCTGAAGTTCTTACTCAATCAGAAAAGCAGGTC
GCGTATCATTCATGTGTTGCACTACGGCAATACTTTAGAGCTCATCTCCTTCAGCTTGTT
GATTCCATCCGGCCAAGCAAGAGTATACGTAGTATTGCTCGGAATACTTCCAGTGCAAGA
GCTGGTTACAAACCTTTTGACATCGGCAACGAGGCTATGGATGCTATTTTTCGTCAGGTC
CAGCGGGACAGAAAGTTAGGACCTGCTCTCGTAAGAGCTCGCTGGCCCGTGATGGATAAA
TTCTTGGCCTCTAGTGGTCATATTATCCTGCTAGAGTTATGCCAGAGTCTACCTACTGAT
CGGTATCTTCATGACTTGGCTCAGTATGCATTTGGAGTTCTTCACATCATAACTCTTATG
CCACACAGCCGCAAATTGATGGTGCATGCTACATTAACTAACAACCGTATTGGTATGGCT
GTTATACTAGATATAGCAAACAGTGTTGTTGGCTATGTTGATCCTGAGGTGATTTGTCCA
GCATTGAATGTGCTTGTCAATCTTGTATGCCCCCCTCCATCGATCAGCAACAAGCCGTCC
TCAGCTGTCAATCAGCAACCTGCAGGAAGTTATTCAGAGAGCAGAGACAGGAATGCCG

Homology of Contig U35_42830 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59460.1	1810	2e-119	protein\|expressed protein
Brachypodium v1_2	Bradi5g27460.1	1905	1e-121
Arabidopsis v10	AT4G31160.1	1883	4e-83	\| Symbols: DCAF1 \| DDB1-CUL4 associated factor 1 \| chr4:15145936-15152939 FORWARD LENGTH=1883