barSeed - Barley Seed Development Database

Probe CUST_32060_PI390587928

Source Contig U35_28540

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32060_PI390587928	Hv_44K_v2	GATGACATTCTGGTGTATGTGACTAAGCAGTGTATAGCTAGGCGAAGGCTTTGTTTTGCT	433	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249835.1	2177	7e-23	1996 - 2055	98	59 / 60	plus	ABC05301
MLOC	MLOC_5002.2	1131	7e-23	45 - 104	98	59 / 60	minus	None
MLOC	MLOC_5002.1	662	7e-23	58 - 117	98	59 / 60	minus	None
JLOC1	JLOC1_3190.1	932	4e-23	640 - 699	98	59 / 60	plus
Harvest21	ABC27490	581	3e-25	434 - 493	100	60 / 60	plus
Harvest35	U35_28540	581	3e-25	434 - 493	100	60 / 60	plus

Contig Sequence (581 bp)

>U35_28540 581 Hv_44K_v2
CTGTGGCTGCTGGNATTGGTTCCTCAAAACAAAACCCTCCTATTGATGCAAGTTCGATGG
CCATAGACGAGCCAGCTGTTGTCAGGGCTGAACCAGAGAGATCAAACAAATTACAGGAAC
AACAAGCATTGCATCAGAAACCATGATCAGCCACCTTAATGTAGCAACAAGCATTGACTC
AATTGGACAAGCCAGGACAGCCTGTAAGCTGAAGCAGAATTCAAACAATTTACTGCACAA
ACTAGTTAGCTACCAGAGAATCCAAGATGGTATGTGTGCCTTCAGAGCCTGTGAAGCTTT
GCGCACTATATTCATGACTTTGACACAAATGATAGTTGATTCGTCAATGACATTTTCAGC
ACTAATTTAAGTCTGGGCCTGTAGAGCAACTGAATTAGTAATGCAGTACATTCCAATTAA
ATGCTTCCGGNGAGATGACATTCTGGTGTATGTGACTAAGCAGTGTATAGCTAGGCGAAG
GCTTTGTTTTGCTGGGAGCTGNGTTCTCTCATCGCATTANGGCCATCTTTCAGTCGGTTA
GGAGGAATATCACTNTACTGTCTTTCCGGTGTCAAGTCTGT

Homology of Contig U35_28540 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None