- Probe CUST_3205_PI390587928
- Source Contig U35_22935
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3205_PI390587928 | Hv_44K_v2 | TCATAGACTTCCACCAGACATTGGAAGTTAATGGCATACGCTTCTGGTGCTATACTGCTG | 461 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_71779.1 | 2635 | 2e-24 | 1952 - 2011 | 100 | 60 / 60 | minus | ABC11280 |
| MLOC | MLOC_71779.2 | 2209 | 2e-24 | 1949 - 2008 | 100 | 60 / 60 | minus | ABC11280 |
| MLOC | MLOC_71779.4 | 1880 | 2e-24 | 1809 - 1868 | 100 | 60 / 60 | minus | ABC11280 |
| MLOC | MLOC_71779.3 | 2554 | 2e-24 | 1917 - 1976 | 100 | 60 / 60 | minus | ABC11280 |
| MLOC | MLOC_71240.3 | 690 | 3e-21 | 625 - 684 | 97 | 58 / 60 | plus | None |
| MLOC | MLOC_71240.2 | 2390 | 3e-21 | 494 - 553 | 97 | 58 / 60 | plus | ABC11280 |
| MLOC | MLOC_71240.1 | 2491 | 3e-21 | 584 - 643 | 97 | 58 / 60 | plus | ABC11280 |
| JLOC1 | JLOC1_47727.2 | 2553 | 8e-25 | 540 - 599 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47727.1 | 2112 | 8e-25 | 99 - 158 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_47326.1 | 2455 | 2e-21 | 502 - 561 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC18469 | 599 | 3e-25 | 462 - 521 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22935 | 599 | 3e-25 | 462 - 521 | 100 | 60 / 60 | plus |
Contig Sequence (599 bp)
>U35_22935 599 Hv_44K_v2 CTCTCTTTCTCTAACAATGGCATCCGCCGCGACGGCGCCGCCGGCGGGGAAGCGGCCGGC GACGGGCGGCCGGGAGGGCGACCAGATGGTGGTCACGCCGCTCGGCGCCGGCAGCGAGGT CGGCCGCTCCTGCGTCCACATGACCTTCAAGGGCCGCACCGTCCTCTTCGACTGCGGCAT CCACCCGGCCTACTCCGGCATGGCGGCGCTGCCCTATTTCGACGAGATCGACCCCTCCGC CATCGACGTCCTCCTCGTCACCCACTTCCACCTGGACCACGCCGCCTCGCTGCCCTACTT CCTGGAGAAGACAACGTTTAAGGGCCGCGTGTTCATGACCCACGCCACCAAGGCTATTTA CAGGTTGCTGCTGTCGGATTACGTCAAAGTGAGCAAGGTTTCCGTCGAGGACATGCTGTT TGACGAGCAGGACATCATCCGTTCAATGGACAAAATCGAGGTCATAGACTTCCACCAGAC ATTGGAAGTTAATGGCATACGCTTCTGGTGCTATACTGCTGGCCATGTGCTTGGTGCTGC CATGTTCATGGTGGATATTGCTGGTGTTCGCATTCTTTACACTGGTGACTACTCCCGTG
Homology of Contig U35_22935 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g63590.1 | 701 | 2e-120 | protein|metallo-beta-lactamase, putative, expressed |
| Brachypodium v1_2 | Bradi1g01200.1 | 691 | 8e-126 | |
| Arabidopsis v10 | AT1G61010.1 | 693 | 8e-111 | | Symbols: CPSF73-I | cleavage and polyadenylation specificity factor 73-I | chr1:22474954-22477660 REVERSE LENGTH=693 |