barSeed - Barley Seed Development Database

Probe CUST_32056_PI390587928

Source Contig U35_28542

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32056_PI390587928	Hv_44K_v2	ACGGTCTGTATTCTGTCATGTCCTGGGTCTGGATCAAATATCATGTATTTATTCTGTCAA	615	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.949	1.233	1.162	0.786	0.270	0.196
Raw	8608.920	8494.240	7116.160	7588.253	918.139	735.024

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC01371	657	3e-25	592 - 651	100	60 / 60	plus
Harvest35	U35_28542	682	3e-25	616 - 675	100	60 / 60	plus

Contig Sequence (682 bp)

>U35_28542 682 Hv_44K_v2
TCCCCCGGGTCTGCAGGCAATTCGGTACGAGGCATTCCTCTCCCCCGCCGCCACCCCGTC
CCTGCATCCTCTCCCACGCCAAGACCGGCGCCGCCGCCGCTCGTCAAGATGGTGCTCCAG
AACGACATCGACCTCCTCAACCCGCCGGCGGAGCTCGAGAAGCTCAAGCACAAGAAGAAG
CGCCTCGTGCAGTCCCCCAACTCCTTCTTCATGGATGTCAAGTGCCAGGGCTGCTTCAAC
ATAACGACTGTGTTCAGCCACTCTCAGACCGTGGTGGTGTGCCCGGGCTGCCAGACGGTG
CTCTGCCAACCCACCGGCGGAAAGGCGAGGCTCACCGAGGGATGCTCCTTCCGCCGGAAG
GGCGACTAAGTTGCACGCCTGTTTATGGGAAAATGAAGCCCCACTGAACGTTACTTTTCA
AGTACTCCTAGTTATCCCCGATGTGTACTGGTCAAATTTTGTTAATTATGCTTGCCCGTT
TGCCAGCCTGAACGTTGTAGCAACTTGTTCTATGTCATGCACTTCCTTGAATCGCCTGTT
GTTGGTTCTTCTGTTTGTCTGGCTACCTGGCAAGTCCGTTTCGTTTGTTGCTGCATTCTC
TTCAGTGTTCAAAATACGGTCTGTATTCTGTCATGTCCTGGGTCTGGATCAAATATCATG
TATTTATTCTGTCAAAAAAAAA

Homology of Contig U35_28542 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None