barSeed - Barley Seed Development Database

Probe CUST_32055_PI390587928

Source Contig U35_42836

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32055_PI390587928	Hv_44K_v2	TGGATGACATTCCTGTTGGATGTTTTCCTCAATTAAATTTTAGTGAAGTTATAGGGGTGT	152	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.702	2.338	1.242	0.636	0.241	0.221
Raw	80.535	111.844	49.922	39.896	4.101	4.390

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC38779	603	3e-25	153 - 212	100	60 / 60	minus	ABC38779
Harvest35	U35_42836	603	3e-25	153 - 212	100	60 / 60	minus

Contig Sequence (603 bp)

>U35_42836 603 Hv_44K_v2
TTTTTTTTTTTTTTTTTATTGATAAGAGGAAGAAATTATATATGAGATAAAATTGTTGGA
TTACAATGATATTACAAGAGGAACATCATCAAATGTGATGCATAATCTAACTATTTTCTT
GAAAATGAAACTTAAACTGAAAGCATCCATTAACACCCCTATAACTTCACTAAAATTTAA
TTGAGGAAAACATCCAACAGGAATGTCATCCACACAACATAACTAAATCTGAAAGAATCT
ATCATCGTCCGCATCATGAAACAGAACATCAACATCATCAATGCAGTACACTTGCCACGC
ATCCATATAGCCATCCACTTATCTTTTTAATAAAGGTTGAGGGCCATGCAATCTTTGTTT
TTTCTGCATTACCGAGAGTATTGTAGTCTTTGCGACTCCGTACCAAATTTTCAGTTTTCA
CAAGTGCCATATCAACATGCACCACCCAATATTCATTTCCAATTTTAGCACCATCAAGTT
TAAATTTAGGATCACAACTCATAATTGTAGCAAGAGCTACGTCCCTATTATGTTTTATGA
GGCTCTTCAGGAATACTTTAGTTCCTACAGGTAATTCACTGGCACCCAACCAGCTCAATG
AAC

Homology of Contig U35_42836 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None