barSeed - Barley Seed Development Database

Probe CUST_32052_PI390587928

Source Contig U35_28544

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32052_PI390587928	Hv_44K_v2	ACTGGAAACGTTGTTTCTTGAAGAAAGCTCCGTTGCTGAGAAAGAAAATGATGAATGGCT	558	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18524.2	5305	2e-24	1161 - 1220	100	60 / 60	plus	ABC03496 ABC22790
MLOC	MLOC_18524.4	4938	2e-24	1161 - 1220	100	60 / 60	plus	ABC03496 ABC22790
MLOC	MLOC_18524.3	5815	2e-24	407 - 466	100	60 / 60	plus	ABC03496 ABC22790 ABC23222
MLOC	MLOC_18524.1	2321	2e-24	635 - 694	100	60 / 60	plus	ABC22790
JLOC1	JLOC1_12821.2	4169	8e-25	3703 - 3762	100	60 / 60	minus
JLOC1	JLOC1_12821.1	4071	8e-25	3605 - 3664	100	60 / 60	minus
JLOC1	JLOC1_12820.1	6029	8e-25	637 - 696	100	60 / 60	plus
Harvest21	ABC27494	618	3e-25	559 - 618	100	60 / 60	plus
Harvest35	U35_28544	618	3e-25	559 - 618	100	60 / 60	plus

Contig Sequence (618 bp)

>U35_28544 618 Hv_44K_v2
GGCCAACCCCCGCTGAAATCCGCGGCGGGCGCAGCGCAGGCAGATCGGGGTCCTGCTCCC
GGCGATGAGCGGCGACGAGCGGCACCTGGGGAGGACCATGAGCTTCGGGATCCCGGACGT
GGCGCTGGGGCTCGTCATGGGGTGCGTGGAGGACCCCTGGGACCGCGACGCCATCTCGCT
CGTCTGCCGCCACTGGTGCAAGGTCGACGCGCTCAGCCGCAAGCACGTCACCATCGCCAT
GGCCTACTCCACCACCCCCGACCGCCTCTTCCGCCGCTTCCCCTGCCTCGAGTCGCTCAA
GCTCAAGGCCAAGCCCCGCGCCGCCATGTTCAACCTCATCCCCGAGGACTGGGGCGGCTA
CGCCTCGCCCTGGATCCGCGAGCTCTCCGCCTCCTTCCAGTTCCTCAAGGTGCTGCATCT
CCGCCGGATGATTGTCTCCAACGACGACCTCGCAGTGCTCGTGCGCGCCAAGGCCCACAT
GCTCGTATCCCTCAAGCTTGACCGCTGCTCCGGCTTCTCTACGCTATCCCTTGCTCTCGT
CGCCCGCCGCTGCAAGAAACTGGAAACGTTGTTTCTTGAAGAAAGCTCCGTTGCTGAGAA
AGAAAATGATGAATGGCT

Homology of Contig U35_28544 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g15880.4	590	6e-110	protein\|coronatine-insensitive protein, putative, expressed
Brachypodium v1_2	Bradi1g67160.1	588	5e-114
Arabidopsis v10	AT2G39940.1	592	8e-57	\| Symbols: COI1 \| RNI-like superfamily protein \| chr2:16672848-16675486 REVERSE LENGTH=592