barSeed - Barley Seed Development Database

Probe CUST_32051_PI390587928

Source Contig U35_42838

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32051_PI390587928	Hv_44K_v2	TGGATTGAAGCGGAGCGTGCAAATTGTGAATTGAAGTACCTGCTGAAACACACTTGTATA	468	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.909	1.225	1.442	1.748	0.506	0.585
Raw	19.533	37.654	42.086	79.997	7.606	10.450

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371843	2486	2e-24	1752 - 1811	100	60 / 60	plus	ABC38783
MLOC	MLOC_39365.3	1070	7e-23	186 - 245	98	59 / 60	plus	ABC38783
MLOC	MLOC_39365.1	1581	7e-23	697 - 756	98	59 / 60	plus	ABC38783
MLOC	MLOC_39365.2	1813	7e-23	991 - 1050	98	59 / 60	plus	ABC38783
JLOC1	JLOC1_25659.1	1445	4e-23	622 - 681	98	59 / 60	plus
Harvest21	ABC38782	531	3e-25	469 - 528	100	60 / 60	plus
Harvest35	U35_42838	531	3e-25	469 - 528	100	60 / 60	plus

Contig Sequence (531 bp)

>U35_42838 531 Hv_44K_v2
TTTGTACCTTCGTTGATTGGGAAATCAAAAATTGGCAAAGGAAAGAATATATCGGGAGTC
CTCAAGGCGATCGAGAATCTAACTGTGGTATTCCAGAGTAGTTTTTCTGGTGATGAAATT
GAGCTAGATGAAGATGACTACATCCTCCTTGAATCGGTGATTGATAGTCTTCAGACTTGC
CTTCATAAAATAAGAAAGGATCCTATTAAGGGTGCTTCTGACAAGGCAGGGCCAAAGACT
CCACATTCTCAGACTACAGTTTTAAAATCTGACGCAAGAAAATATAATAGTAGTTACATT
GCAGATGGTGAAAAGGACATAATTATTAATCATTTTGCTGGTTCTAGTCATATCCACAAT
GAGTTTGGAAGAAACGGCTTGACACGGNGCCAGCCTGCACTCAACAATGTCCAAAAGAAG
ATGCCCTGTGAGGAAGAGCATCCACAGGTTCTTGTGTATAAGAATCTGTGGATTGAAGCG
GAGCGTGCAAATTGTGAATTGAAGTACCTGCTGAAACACACTTGTATAAAA

Homology of Contig U35_42838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g16490.1	712	6e-65
Arabidopsis v10	None