barSeed - Barley Seed Development Database

Probe CUST_32038_PI390587928

Source Contig U35_16572

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32038_PI390587928	Hv_44K_v2	ATAGACCAAACTCAGGTTTGGTTGCTTTTGTGATCTCTAAAACAAGCAAGTTTGTCGAAA	1509	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.343	1.560	1.236	0.828	0.307	0.339
Raw	650.311	1192.279	820.194	873.011	112.598	136.424

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17089.1	1607	2e-23	1367 - 1424	100	58 / 58	plus	ABC05879
JLOC1	JLOC1_11802.1	1569	1e-23	1371 - 1428	100	58 / 58	plus
Harvest21	ABC05879	1568	3e-25	1495 - 1554	100	60 / 60	plus	ABC05879
Harvest35	U35_16572	1583	3e-25	1510 - 1569	100	60 / 60	plus

Contig Sequence (1583 bp)

>U35_16572 1583 Hv_44K_v2
CCCCTCCGTCCGCGTCCCGCCCCGCGCCGCCCAGATCCGCTGCGCGGCGGTCGCGGCGCC
CTCCGCCCCCGCCCCCCTCGCCGCCGCCGGCGACCGCGGCGTCTACAACTTCGCGGCGGG
CCCGGCCACGCTCCCGCTCTCGGTCCTCCAGAGGGCGCAGGCGGAGCTCGTCGACTACCG
CGGCTCCGGCATGAGCATCATGGAGATGAGCCACCGGGGCAAGGAGTTCGACGCGGCCAT
CAAGAAGGCCGAGTCCGACCTGCGCGCGCTCCTCGCCGTCCCCGACACCCACGAGGTCCT
CTTCCTCCAGGGCGGCGCCACCACCCAGTTCGCCGCCGCGCCGCTCAACCTCTGCGCCTC
CCCCTCGGACCCCGCCGACTTCGTCGTCTCGGGCTCCTGGAGCGACAAGGCCTTCAAGGA
GGCCAAGAAGTACTCGGCCGCCTCCGTCGCCTGGTCCGGCAAGGCCGGCAAGTACACCTC
CCTCCCGGAGGACCTCGGGGCCCTCCCGCAGAACCCGGAGGCCCGCTTCCTCCACATCTG
CTCCAACGAGACCATCCACGGCGTCGAGTTCAAGGACTACCCCGTGCCGACGAACAAGTC
CGGCGTCCTCGTCGCCGACATGTCCTCCAACTTCTGCTCCAAGCCCGTCGACGTCTCCCG
GTTCGGCCTCATCTACGCGGGGGCGCAGAAGAACGTCGGCCCGTCGGGCGTCACCATCGC
CATCGTGCGCAAGGACCTCGTCGGCGCCGCGCAGCCCATCACCCCCGTCATGCTCGACTA
CAAGACCCACGCCGACAACGCCTCGCTCTACAACACCCCGCCCTGCTTCGCCATCTACAT
CTGCGGGCTGGTGTTCGAGGACCTGCTCGCCCAGGGCGGCCTCGCCGAGGTGGAGAAGAA
GAACCAGCACAAGGCCGGCATCCTCTACGACACCATCGACGCCAGCGGTGGCTACTTCAT
CTGCCCCGTGGACAAGCCGGTGCGGTCGCTCATGAACGTGCCATTCACGCTGGCCAAGGG
CGCCGACTTTGAGAAGCAGTTCATCGCCGAGGCGGCCAAGGAGGGCATGCTGCAGCTCAA
GGGGCACAGGTCGGTCGGCGGCGTGCGCGCCTCCATCTACAACGCCATGCCGCTCTCCGG
CGTGGAGAAGCTCGTCGCTTTCATGAAGGACTTCCAAGCAAGGAACCCTTGATCGGCCAT
GATCCTCTGGTATTGCTCGCTCTAGTAGGATGGCTTGTTGTTGGTCAGTAACATAAGTAG
GCTCTGTGCAAGAGCTGCATCGTCGTCTCCCATTTGAGGTTTCCTATCCATGCGTAGTAT
TAGTATGGTAACTATATTTTGCAATGCTGCTGCATTTTCCCACGATTGTGGGACTCTTTT
CCATTGCTCACTTTTGAGATTGGAACATGTTGTATTGGGGAATAAAGGTTGATTAATAGC
CAAAAAAAAAAAAAAAAATTGTCTTCACATCTTACCTGATTCTTATGTATGGTTGAGAGT
TTATGTTGGATAGACCAAACTCAGGTTTGGTTGCTTTTGTGATCTCTAAAACAAGCAAGT
TTGTCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_16572 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g06200.1	427	protein\|aminotransferase, putative, expressed
Brachypodium v1_2	Bradi1g74590.1	421
Arabidopsis v10	AT4G35630.1	430	\| Symbols: PSAT \| phosphoserine aminotransferase \| chr4:16904205-16905497 FORWARD LENGTH=430