barSeed - Barley Seed Development Database

Probe CUST_32034_PI390587928

Source Contig U35_16574

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32034_PI390587928	Hv_44K_v2	AATGTAAGAGGAATGGTATTGTTGCGCTATAAAGTGTATAAATGCTCGTGCTTTGCACGG	891	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.376	2.055	1.328	0.501	0.094	0.089
Raw	17600.833	13691.230	7541.690	4182.553	309.622	313.621

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62754.1	2228	2e-24	2136 - 2195	100	60 / 60	plus	ABC10396
JLOC1	JLOC1_41093.1	2166	8e-25	2074 - 2133	100	60 / 60	plus
Harvest21	ABC10396	1015	3e-25	892 - 951	100	60 / 60	plus	ABC10396
Harvest35	U35_16574	983	3e-25	892 - 951	100	60 / 60	plus

Contig Sequence (983 bp)

>U35_16574 983 Hv_44K_v2
GGAGATATGGCGTTCGCCAAGTCACAGGTGGACTACATCCTGGGGAGCAACCCGAGGGGC
ACGAGCTACATGGTCGGGTACGGCTTCATTTACCCGCTGGAGGCGCACCACCGCGGCGCG
TCCATCGTGTCCGTCAAGTCCAACCCGGCGTTCGTGAGCTGCCGCGGCGGGTACGCGACC
TGGTACCCACGCAAGGGCAGCAACCCGAACCTGCTCGACGGCGCCATCGTCGGCGGGCCG
GACGAGTACGACAACTTCGCCGACGAGAGGAACAACTACGAGCAGACCGAGGCCACCACA
TACAACAACGCGCCGTTCATGGGCGTGCTCGCTCGGCTCGCCGCCGGCCAAGGTGGTGGC
GGCAGGTTTGATCGGTCAGGGCTCGACAACCAGACCTCACTAGTGCCATCTCTTTCTGCT
GCCGCCGATCAAGCTGAGCACAAGTCGCCGATCGTGATCGAGCAGAACGCGACGGCGTCA
TGGACGGAGAAGGGCCGGACGTACCGCCGGTACGCGGTGACGGTGACCAACAGGTCGCTG
AACAAGACGGTGCACGAGCTGTACCTCGGCATCGCCAGTCTCTACGGCCCGGTGACGGGG
CTCGACAAGACGCGGTATGGCCACGTGCTCCCTGGCACGGCCCCGTCGGTGCCCGCCGGC
GGGAGCGTCACGTTCGAGTACGCCCACGCCGCGCCGCCGGCGAACGTCTGGGTCACCGGC
TACAAGCTCGTCTGAACTGAAACCAATGGTAGTCAAGTTTGTCAGGTTAACAAGAGGGAA
GCTGGAGCGATGGGGCTAGTGACAATCTCTCAGCCATCCTCCATACGCTGTTATAATAAG
CTAAGCTAAGTTCGTAGGAGTAACTAGTAGATGTGTGTTATCGTGATTGAAAATGTAAGA
GGAATGGTATTGTTGCGCTATAAAGTGTATAAATGCTCGTGCTTTGCACGGATAAAATAT
TATAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16574 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12070.1	641	8e-97	protein\|endoglucanase precursor, putative, expressed
Brachypodium v1_2	Bradi2g07150.1	629	8e-107
Arabidopsis v10	AT4G11050.1	626	4e-68	\| Symbols: AtGH9C3, GH9C3 \| glycosyl hydrolase 9C3 \| chr4:6747498-6751311 REVERSE LENGTH=626