- Probe CUST_3201_PI390587928
- Source Contig U35_22939
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3201_PI390587928 | Hv_44K_v2 | TTGTACTATGTAATTGAAAAATGAATTCTCCCAGGTAGGCGTGCATTGGGCAGCAGGTCC | 943 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.835 | 1.914 | 1.244 | 0.645 | 0.375 | 0.365 |
| Raw | 84.712 | 137.779 | 78.099 | 62.968 | 13.624 | 13.676 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364354 | 1967 | 2e-24 | 1834 - 1893 | 100 | 60 / 60 | plus | ABC08821 ABC10382 ABC20973 |
| MLOC | MLOC_36810.6 | 2020 | 2e-24 | 231 - 290 | 100 | 60 / 60 | minus | ABC08821 ABC10382 ABC20973 |
| MLOC | MLOC_36810.5 | 2406 | 2e-24 | 231 - 290 | 100 | 60 / 60 | minus | ABC10382 ABC20973 |
| MLOC | MLOC_36810.7 | 2397 | 2e-24 | 231 - 290 | 100 | 60 / 60 | minus | ABC08821 ABC10382 ABC20973 |
| MLOC | MLOC_36810.8 | 2112 | 2e-24 | 231 - 290 | 100 | 60 / 60 | minus | ABC10382 ABC20973 |
| MLOC | MLOC_36810.2 | 2126 | 2e-24 | 335 - 394 | 100 | 60 / 60 | minus | ABC08821 ABC10382 ABC20973 |
| MLOC | MLOC_36810.1 | 2487 | 2e-24 | 335 - 394 | 100 | 60 / 60 | minus | ABC08821 ABC10382 ABC20973 |
| MLOC | MLOC_36810.3 | 2132 | 2e-24 | 335 - 394 | 100 | 60 / 60 | minus | ABC10382 ABC20973 |
| MLOC | MLOC_36810.4 | 2122 | 2e-24 | 335 - 394 | 100 | 60 / 60 | minus | ABC08821 ABC10382 ABC20973 |
| JLOC1 | JLOC1_23751.6 | 2221 | 8e-25 | 1802 - 1861 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23751.5 | 2152 | 8e-25 | 1733 - 1792 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23751.4 | 2162 | 8e-25 | 1743 - 1802 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23751.3 | 2534 | 8e-25 | 2115 - 2174 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23751.2 | 2524 | 8e-25 | 2105 - 2164 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23751.1 | 2144 | 8e-25 | 1725 - 1784 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22939 | 1046 | 3e-25 | 944 - 1003 | 100 | 60 / 60 | plus |
Contig Sequence (1046 bp)
>U35_22939 1046 Hv_44K_v2 AATTATGCCTATTTAATTACTGCGCCTTAAAGGGGTGTACAGGCTACGTACTTCGCTTTG TCTCCAGTTTAAACCCAATCATATTACGGCCGGAGCAATCTTCCTTGCTGCGAAGTTCCT CAAAGTCAAGCTTCCATCAGATGGTGAGAAGGTCTGGTGGCAAGAGTTTGATGTAACCCC TCGGCAGTTGGAAGAGGTCAGCAACCAAATGTTGGAGCTGTACGAGCAAAACCGTGTGGT GCCACCACCATCCCAAGGGAATGATACTGAAGGCAGCTCTGCAAGTGTGGTTAATCCACG TGCTCTTGGAAAGGCTCCTGGAGCTGCAGAGGAGCGCCATGGTCATGAAAATCATCAAGC ACCTAGACAGTCGAGCATGGCAGGCCCCCCTGAAAAGAAAAACTCAAACCAGAGGATACC CAAGGTGGAAGCAAAGGATGGTATTGCCAGCAGCAACGAAGGCCCTAATATGTCATCCTC AATGGATGCAATGAAAAAGATAGACAAAGATAAAGTGAAAGCTGCGCTTGAGAAACGGAG GAAATCAAAAGGTGATGCTGGTAGAAAGGTTGACATCATGGATGACGATGACCTGATTGA GAGGGAGCTGGAGCATGGCGTGGAGATGGCTGCCAAGGATGAGAAAAAACACGACAGAAG GCAGAGCTGGCCCCAGCCCCTGCACCAGAGTGCTGGTTGCACGGCAGAGAACGCCGAGGA GGGCGAGCCCTCGATGGACAGTCAAGAGTACCTTTCCTCCGTGACTGAGCTCGACGACCG GAAGAGGAAGGATGCATATGACCACAGGAGCCATGATCACGTCGAGAGGGACCATAAAAG GGTGAGGTCGTGAAAGCGAGTACACGTCACTGCCCCCCTCCCCTGCGTAGAACAACTGGC AGATTGTAATCTGATATGTTGGGAGATTTTAACTGTTAATGTATTGTACTATGTAATTGA AAAATGAATTCTCCCAGGTAGGCGTGCATTGGGCAGCAGGTCCATGCTGCGAAAATGGTG TGAAGTGGAGAGCGGCCGCTCGAGCA
Homology of Contig U35_22939 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g05850.2 | 269 | 3e-104 | protein|cyclin-T1-3, putative, expressed |
| Brachypodium v1_2 | Bradi1g47510.1 | 488 | 5e-132 | |
| Arabidopsis v10 | None |