barSeed - Barley Seed Development Database

Probe CUST_32016_PI390587928

Source Contig U35_28556

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32016_PI390587928	Hv_44K_v2	TCTGGGTATGCCTGTGGTAACGCTGCTGCTTTTGTTTATCTGAAAGGCAAATCCAAGAGA	401	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5765.3	847	2e-24	355 - 414	100	60 / 60	minus	ABC04545
JLOC1	JLOC1_3726.1	1453	8e-25	415 - 474	100	60 / 60	plus
Harvest21	ABC27508	587	3e-25	402 - 461	100	60 / 60	plus
Harvest35	U35_28556	587	3e-25	402 - 461	100	60 / 60	plus

Contig Sequence (587 bp)

>U35_28556 587 Hv_44K_v2
GGCAACCAGAGAGAAGTGCGAGCTCCTCCCTCTCCTCCGACCCGCGCCGCCGCCTATAAC
GACCACTTCACGTGGCCTATCCTTCTCCCCCTTTTTGTTCCTCGCCTAAACCACCACAAG
CATGGAGGCCAAGAAGTCGCCGCCCACCCCTGCCTCCACCGGATCGGCGGCGGCGGGGAA
CGGATACTTCAGCTCCGTCTTCTCCGCGTCGCCTGCGGTACTTCCTCTTCACGCCGTTTT
TTGCGATCTGTCTGCTGTCAATTGGCGATGTGATTCGGCGACTCTGATACCTTGAATGTC
CGTGGCGACTGCCTGATGTTCTTTACCTATTGGGTTCATTACGTGTATTATTTTTGGGGC
AATTTTCGTGATCCTATATGTATTTTGTTGTCATATTCACATCTGGGTATGCCTGTGGTA
ACGCTGCTGCTTTTGTTTATCTGAAAGGCAAATCCAAGAGACGCCAGGCAGATGGACCTG
TACACGATGCTGAACAAGCAGAACCCCAAAGGGCAGAGCGGTGGGGGCACTGCAGATGGC
AAATCCCAAGGAAGCCCTGCTAAAGGTCGTGTTGCTTACAAAGATGG

Homology of Contig U35_28556 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None