barSeed - Barley Seed Development Database

Probe CUST_319_PI415269222

Source Contig TA40644_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_319_PI415269222	Hv_44K_v2	AACCTTTTGTGCTGGGAGTTGTTGATCCACATGATTCATTATCTCATCCTGCAGGGGTCT	1226	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368875	2247	2e-23	1514 - 1571	100	58 / 58	plus	ABC10540 ABC24569
MLOC	MLOC_7168.2	1588	2e-23	584 - 641	100	58 / 58	minus	ABC10540 ABC24569
MLOC	MLOC_7168.1	2197	2e-23	657 - 714	100	58 / 58	minus	ABC10540 ABC24569
JLOC1	JLOC1_4727.1	1933	1e-23	1126 - 1183	100	58 / 58	plus
Harvest35	U35_4174	2184	4e-24	1374 - 1431	100	58 / 58	plus

Contig Sequence (1960 bp)

>TA40644_4513 1960 Hv_44K_v2
CTTCCCGGAGGGCACGCTCACGCAAACCCTCACGCAGCTCAAGGCGAAGCTCGCGGCGCC
GGGCCACGGGCGCGTGGGCGCCGCGGCGCTCGCGGAGGCGCTGCAGATCCCCGCCGACCA
GGCCGCGCTCGCGCTCGGGACGCTCGCCGCGGTCCTCCCCGGCGAAGGCGACGGCCCCGC
CGCGGACGGCGCGTGGGAGGCCGACCTCCGCGACGTGCTCCTCTTCCTCTACATCCAGTC
CTACAAGCGCCTCGTGCCGCGCGCCCACAAGGACTCGCCGTCCGTCGCCGACGTCTGGCC
ATCCACCTCCGCGTTCGACGGATACCTCTCCGCGCTCTCACCGATCCAGCTTGTACGCAG
TAATAGCCGTCGGTTTATGCCTTCGCAAGCAGATGAAGAAGCTCATCAGCTATCTTATTT
ACAAAAGCATATGGCCAATGTTTTAACTCTTTTGGCAGATTCTGTTGATGGAGAGGGTGA
TGAATCTATGGTACTGACAATGGAGACTTTTGAGCACCTTGGATTCTTGTTGCAGTTTTC
TGAAGGAACTCCTTTAAGCCAAGCTGCTCCATTTTTTGCGAATTCTGATCCAGACATGCC
TGCTGCTCCTGTTCCGGCTACTCAAGTTCATGAATGGATTCTGCAGAATATAGCTTCTTC
CTTGGAATACACTGCAGAAAAATCTATAACTAAGGAAAACAATCAACGGAGTGTATCTGA
TCCTGATGTGGCAATGGCTGATGCTGTCACAAATACAAGAATTCAGAGCATCTCACCAAC
TGGTGCTTCTGTGCAAAACAATCCTGGATACTACCGAAATACGTCTTTTGTGGAGGGTAT
CTCCAAAACTTCTGTTGTCAAACACGGGTCTGATATTAAAGGGCATTCAATAAAGGTTTT
GAATTGCCATGATTCTGTTATCTACATCCTAGCCCCTCTCAAATATGCTACGGTGTATGG
ATGTTCTGACATAACTGTTGTTCTTGGTGCTATTGGCAAGGTGGTAAAAGTTGAGCATTG
TGAACGTGTGCAAATAGTTGCGGCTTCTAAAAGAATCTGTATTGCCAATTGTCGAGAATG
TATCTTCTACTTGGGAGTAAATCACCAACCACTTATAGTGGGGGACAACCATAAATTACA
AGTTGCTCCATTTAATACTTATTATCCACAACTTGGGGAGCATTTGGAACAAGTTGGTGT
GGACCCTAGCGTCAACAAGTGGGATCAACCTTTTGTGCTGGGAGTTGTTGATCCACATGA
TTCATTATCTCATCCTGCAGGGGTCTCTGATGTACAAGCCGAGTCTGCCACTTGTCTAGA
CCCTGATCTATTCACAGACTTCATGATTCCTAGTTGGTTTGAGGCAGAAGGTCCTACCAA
ATACAATCCATTTACGTTACCTGAAGTTTACTGGGCATCACAGAGGAAAAAGAATGCTTC
TCTGGAAGACATTCAAAAGAGTTTACGGGAGCTGGAGCTTGATGATAACCGGAAAAAAGA
ATTGGCATGTGCCCTTCATTCTCAATTCAAAGACTGGCTATATGCTTCAGGAAATATCCG
CCAGCTTTACTGTTTGCAAGGCGAATAAGCATATATGATCTTCATCCGTAAGTGCTTAGG
CGCACCTGTGAAGATTGTGCAGCATCCTTTGCCCGGTCCATTGTGCATCCTTTGCCCGGT
CCCCTTCCGTAGTCCAGTCCTGTCCATCCGACCGCATCGTCCACGCTGACTTCTCGTCGA
CTGAGCTGATTCAACCATGCAGTGTTTGTCAATGTAAAAGAAATAATGTACTGCTCATTT
TTGTCTACTAATTTTGATCGGCTTCCCCTTGTGTTGGTTGTGGTTGGTGCAAGGATCCAA
ATGGGGGTTTGGTAGTTTCATATTTATATCCTTTGTAACATATACGACCATGAAAGCGGT
TACTCAATTCTTTAGTGAAAATAAACATTTATTTTTGCTC

Homology of Contig TA40644_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g41110.1	624	protein\|tubulin binding cofactor C, putative, expressed
Brachypodium v1_2	Bradi1g35950.1	584
Arabidopsis v10	AT2G42230.2	568	C-CAP/cofactor C-like domain-containing protein \| chr2:17593705-17596563 REVERSE LENGTH=568