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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_319_PI390587928Hv_44K_v2TCAGAAGCAAGTTCGATTCTTAACACTCTCAGGGATTTGCAGAGCTGGAATATGGGATGC501GeneList: lightyellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.4100.7131.6701.6851.5640.943
Raw 3.80113.11129.21843.50313.0389.875



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC1277810513e-25502 - 56110060 / 60plusABC12778
Harvest35U35_200479983e-25502 - 56110060 / 60plus



Contig Sequence (998 bp)

>U35_20047 998 Hv_44K_v2
GCACAACGAGAGTCCCAAGTGCACGTGTGCACGTGCTAACCATCCACAAGCACACACGCG
AGTGGTGGTAGCGGAAGCCATGCCTCCCCTACTCCTCCCGGCCTCGCCGTCGTTATCGCT
ACACTCCGCCGCTGCCGCTGTCGCTGCGTCGTCCTCCCGCCGCGCCAGGGTCGCTGTGGC
GTCCAGGAGCTCGTCGTCGTCGTCGTCGTCCTTGGACGAGTCCGCCTTCGAGGCCGAGCG
GCTCCGCCTGGACGCCGACGCGCGGGCCTCGATGGCGACCACCGCCGCGGGGGCGCAGGC
GGTGGCGGACCCGAGGGCGTGGAAGTGGAAGATACGAAAGCGGGTGTGGGACGTGCTGGA
GGCCGAGGGCGTCGCGCGCAACCCCCGCCCCGTCCACCACCGCATCCCCAACTTCGATGG
CGCCGCCGCCGCTGCCGATTCGTTAGGTAGGTTGGACGTGTTTCAGAATGCACAATGCGT
GAAGGTCAATCCGGATTCGCCTCAGAAGCAAGTTCGATTCTTAACACTCTCAGGGATTTG
CAGAGCTGGAATATGGGATGCTTCGTTATATGGGAGCTATAGATGATTCGACCATGGTAG
TAACAACTGTACATGACAAGCAATTAGTGGATGACATTCCAGTTGAAAAGCTGCTAATTC
ATGATGTACCGGTTGATATTATCTGCACCCCAACTCAGGTCATCTTAACAAATACTGCAA
TCCCAAAACCACAAGGGATTTACTGGGAAAAACTATCTCCAGAAAAATTGGGCCAAATTC
GAATTCTAAGAGAGCTGAAGAGACGCATAGAGCAAGAGACAGGAACAATACTTCCTTGTG
GGCCTTCTGAGAATGTACCACCAACAGCTCAGCGAAGAAGAAGAGGGCGGTAACTAAGTA
CGTGTATCATAACTGCCTGATTCTATCGCATGTTATACATATATTTGGAGAAAATTAAGG
TATCTTAAGCATTGCGCGGTTCAAAAAAAAAAAAAAAA



Homology of Contig U35_20047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os12g07020.13513e-56protein|5-formyltetrahydrofolate cyclo-ligase, putative, expressed
Brachypodium v1_2Bradi4g41650.13491e-60
Arabidopsis v10None