barSeed - Barley Seed Development Database

Probe CUST_31992_PI390587928

Source Contig U35_16589

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31992_PI390587928	Hv_44K_v2	GCCTTTGCCTACCAGGTTGCCGTCGATGTTAATTTGCCCTCTATGAGAGAAACTAAAAAA	451	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.720	0.287	0.327	1.108	1.960	4.859
Raw	48.199	20.684	32.172	155.875	104.880	284.275

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51412.1	874	9e-22	653 - 710	98	57 / 58	plus	ABC05429
MLOC	MLOC_51412.2	562	9e-22	443 - 500	98	57 / 58	plus	ABC05429
JLOC1	JLOC1_32842.1	703	5e-22	143 - 200	98	57 / 58	minus
Harvest21	ABC05429	522	3e-25	452 - 511	100	60 / 60	plus	ABC05429
Harvest21	ABC05430	678	4e-24	565 - 622	100	58 / 58	plus
Harvest35	U35_16589	522	3e-25	452 - 511	100	60 / 60	plus
Harvest35	U35_16590	685	4e-24	566 - 623	100	58 / 58	plus

Contig Sequence (522 bp)

>U35_16589 522 Hv_44K_v2
GAGACGACCAAGGTAGCTCTCGTCGAAGTAGAGGAGGCCGCCGGAGTTAACTCGAGCAGT
TTGATATGGCGATCAGGAACGCGACGAGCTGCGGTGCGCGATGCGCACCATCCGGACGCG
CTTCTCGGGGTACAAGAGCAAGCGTGGCATCGAGTACGCCGACACCGACGGCGACGGCTA
CGTCGACGACGGCGAGGTGGACGGCCTCATCGAGTACGCGCAGAGGAGCCTCGGGCTCAG
GATCGTCGCCTACTAGAGAGGAGTCAAGCTAGGTCTATTAAGGGAAGCTAGCTCCATATC
TATCCATGCATGTTACCTGCTAGAATAAGCTTTGATCAATCGCCTGTACCTTCGCTTTCT
TGTGTACTTATTGGCTAATCTGTGCCGACGTGTGCGTTTGTGATCTATCATGATGTATTT
GCAGCGTGTGGCGCAGGCGGCCGGCAGGTTCGCCTTTGCCTACCAGGTTGCCGTCGATGT
TAATTTGCCCTCTATGAGAGAAACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None