barSeed - Barley Seed Development Database

Probe CUST_31976_PI390587928

Source Contig U35_16725

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31976_PI390587928	Hv_44K_v2	CTTCAGGTTAAATTTAGACCCTGCCGGTCAAAGATTGTTTTATCAGAATTTAATGCCTTA	1400	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.884	1.950	1.217	0.774	0.311	0.415
Raw	636.334	1037.779	558.631	562.371	78.495	115.519

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC47719	426	3e-25	17 - 76	100	60 / 60	minus	ABC47719
Harvest35	U35_16725	1476	3e-25	1401 - 1460	100	60 / 60	plus

Contig Sequence (1476 bp)

>U35_16725 1476 Hv_44K_v2
TCGGCTTCCGTTGCGAGACGGACCGCCCACCGCTTCATTTCCGCCACCGCCGACGCCGCG
CCGGCGAAGGAGCCCCTAGCCAGATCGGATCCCTCAGCCGCGACGCGGCCTTCCCGCCTC
GAACATGGCGGCTCTGCTGATGCGTAGGCTCGCCGGGTCCTACCGCGGCCGCGCGCCGCT
GGCCGCCGCCGCCGCCGCGGGCGGGGCCGCGCTCTTCTACGCCTCGTCGAACCCCACCAT
CGCGCACATGGAGGAGAAGGGGGAGGACGCCGCCGCCAAAGTTGCTCTTAACCCCGAGAA
ATGGTTAGAATTCAAGCTCCAGGAGAAGGCAACAGTTAGTCATGATTCAGAGCTATTCAG
ATTTTCGTTTGACCCATCTACTAAGCTGGGCCTGGATGTTGCCTCATGTCTCGTAACAAG
GGCCCCCATAGGTCAGGAAGTGGAGGGAAGAAGAAAATACGTTATTCGCCCGTACACGCC
TATCTCTGACCCAGATTCTAAAGGACACTTCGACCTATTAATCAAGGTTTATCCTGATGG
GAAAATGAGTCAGCATTTTGCTAGTTTGAAGCCAGGAGATGTTCTCGAAGTCAAAGGGCC
CATTGAAAAGCTCAGATATAGCCCAAATATGAAAAGACAAATTGGCATGATTGCTGGTGG
TACTGGCATAACACCAATGCTGCAAGTTGTTAGGGCCATCCTGAAAAACCCTGATGATAA
CACTCAGGTTTCCTTGATTTACGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGGA
GTTAGATAGACTTGCCAGCAGCTATCCTAATTTCAAGGTATTTTATACAGTTGATAAACC
ATCAAGTGACTGGAGGGGTGGTGTTGGCTACATATCAAAGGACATGGTTTTGAAAGGTTT
GCCAGGCCCAGGGGAGGATTCTCTTATTCTTGTTTGTGGTCCTCCTGGAATGATGAATCA
CATATCTGGAGATAAGGCAAAGGATTATTCACAAGGCGAGGTCACTGGCCTTCTCAAAGA
TTTAGGGTACACGTCACAGATGGTATACAAATTTTAGTCGATCGCCGGAAACGTAGGGGA
CGCTGACATGCCATGGCAGTAAAATAAACCGCAGCTGAACCTTTTTTTTTCATCGCGCCA
CGGCAATTAGTGCCAAACTCAGAGCAGTATGGTGCATCTTTTTGTAAGAATTTTGGTTCG
GTTCCGTTTTGTCATCTGTGCGCCTCGTTGCATGGACACCTGAATAACCTGAGGCTGCCT
GGTTGCTGGTGTTGTTTTAACCGGGCCTTTCTCTTTACGATACTGGATTGAATGAGGTAA
CAGTTTGATTCGCACAGGCCAAGCATGCCATGATCACAAGCTAGCATTGCACTCAATGAG
TGGGTTTTTTCTATTTGCTGCTTCAGGTTAAATTTAGACCCTGCCGGTCAAAGATTGTTT
TATCAGAATTTAATGCCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16725 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g07910.1	312	0.0	protein\|NADH-cytochrome b5 reductase, putative, expressed
Brachypodium v1_2	Bradi2g04610.1	312	0.0
Arabidopsis v10	AT5G20080.1	328	1e-149	FAD/NAD(P)-binding oxidoreductase \| chr5:6782708-6786360 FORWARD LENGTH=328