barSeed - Barley Seed Development Database

Probe CUST_31965_PI390587928

Source Contig U35_885

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31965_PI390587928	Hv_44K_v2	GAATATATCCTCTTTTGTTCTGGACCGAGCGTTTGCAATCAAGCTGGTACAGTTCTCAAA	939	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.444	2.354	1.568	0.877	0.328	0.194
Raw	65.627	152.583	92.251	82.223	10.212	6.257

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_2888.1	3046	1e-23	2791 - 2848	100	58 / 58	plus
Harvest21	ABC14476	1013	3e-25	940 - 999	100	60 / 60	plus	ABC14476
Harvest35	U35_885	1013	3e-25	940 - 999	100	60 / 60	plus
Harvest35	U35_883	1195	4e-24	897 - 954	100	58 / 58	plus

Contig Sequence (1013 bp)

>U35_885 1013 Hv_44K_v2
GTCCCCCGGGTCTGCAGGCAATTCGTCACGAGGCTCGGATTTGACATGGTAGATGCAGTT
ATCAAAGCGCTTGACGATTCGGGCTACAACAAACAAACTGCTCAGAAAGTTATGATTCAG
TCAACCAACAGCTCGGTACTGGTGAAGTTCAAGCAGCAAACGAAGTACGACCTTGTGTAC
ATGATCAATGAAGATGTCAGCGATGCCGCGCCTTCCTCCCTCGCGGGCATTAAAAAGTTT
GCCGATGCCGTTTCTGTCGAAACCAGCTCTGTTTTCCCCGAAAACCGCCATTTCACTTCG
CACCAGACAGACCTTGTCGAGTCCTTGCAGACCGCCGGGCTCTCGGTCTACGCCTACAAT
CTCATGAATGAGTTTGTTTCTCAGCCGTACGACTTCTTCTCGGATGCGACCGCGCAGATC
ATTGCCTATGTTCAGGGTGCCGGAGTGGATGGGCTGATCACCGACTTCCCGGCGACCGCC
CGGAGATACAAATCGAACACTTGCATGAACATGGGGAACAAAACCCCAAGCTTCATGGCC
CCTCCTCGTCCTGGTGATCTGCTGCAGCTCATCAGTAAGCCGGCACAACCACCGGCGCTA
GCCCCGATGCCGCTTCTATTGGATTCTGACGTGTCGGAGCCGCCCCTACCGCCTGCAAGA
TCGAACACTGCTACTACAGCTCCAGCACCTTCGTCTGCACGCAGGACGCAGACTGGTATC
CCATTCCTCGTCACCTTGGCAATGCTTTGCGCCTGGGCCGCGATCTGAGGTGGCAATGCC
ACATGTCAGTATGGCACGCTAGAGGTCTGCCGGTCTACTAATCCAATGTTGTCTTCTCCT
TCGGTGATTCATTTGTTCTTGTAACTTTTGCGTTGCGGGGTTATATCCGGGATGCCCCTA
TAACACTCCCTAGTGATTATTATCAGTACATATGTGTTGGAATATATCCTCTTTTGTTCT
GGACCGAGCGTTTGCAATCAAGCTGGTACAGTTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_885 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g39610.2	590	5e-102	protein\|glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
Brachypodium v1_2	Bradi5g13120.1	745	1e-102
Arabidopsis v10	AT4G26690.1	759	2e-56	\| Symbols: SHV3, MRH5, GPDL2 \| PLC-like phosphodiesterase family protein \| chr4:13456793-13459890 REVERSE LENGTH=759