- Probe CUST_31958_PI390587928
- Source Contig U35_28706
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31958_PI390587928 | Hv_44K_v2 | TTAACAGTAAATTCAAAGGACGAGCCAACTTCCTGCCCAGAAATGAGTTCAGGCGTGCAA | 670 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.947 | 2.030 | 2.854 | 1.400 | 0.664 | 0.561 |
| Raw | 131.606 | 438.080 | 528.764 | 388.161 | 67.722 | 63.588 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_37402.8 | 3678 | 2e-24 | 1932 - 1991 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.5 | 4451 | 2e-24 | 2705 - 2764 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.6 | 4626 | 2e-24 | 2798 - 2857 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.2 | 4372 | 2e-24 | 2709 - 2768 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.3 | 4463 | 2e-24 | 2799 - 2858 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.4 | 4362 | 2e-24 | 2699 - 2758 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.1 | 4073 | 2e-24 | 2802 - 2861 | 100 | 60 / 60 | plus | ABC10753 ABC29439 |
| MLOC | MLOC_37402.7 | 4706 | 2e-24 | 2796 - 2855 | 100 | 60 / 60 | plus | ABC10753 ABC29439 ABC42694 |
| JLOC1 | JLOC1_24220.2 | 4873 | 8e-25 | 2809 - 2868 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24220.1 | 4866 | 8e-25 | 2802 - 2861 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27717 | 734 | 3e-25 | 671 - 730 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28706 | 734 | 3e-25 | 671 - 730 | 100 | 60 / 60 | plus |
Contig Sequence (734 bp)
>U35_28706 734 Hv_44K_v2 GGTCTGCAGGCCATTCGGTACGAGGTACCTGCATAATGAAAATGAGAAGATAATTGAAGT GCCCTGTGAATCGCTAATCTCCAAAGTAGAGAAAGTTGAAGGTGAGGTTGAACTTCGTCC ACACGCACATTCTGAAGAGTCAGTTCCAGATCAGGATGTTGTGTGTTCTGAAGAGAGTGA CATTACTCAGCAAACCAGCAATCCGGTAGTATCAACCATGCTGAATGTATTTGAGATAGC CAGCAAGTTCATTAAAGGAGACCTTGATCAAGAAATACAGGGTTCATTAGGGCCTGTTGA AGTGAAAAATAGAACAGAAGAAGGGACTGATAGACTTGAGTCTGATGGTAAAGGGAAAGA AGCACAAAAACTCCACTCAGAAAACAGTGAGAAGACAGATGTTGAAGCAGAGTCAGCTCA TGATACTGATAGACTTGAGTCCGATTGTGAAAGGAAAGAAGCAGAAAACTCCTCAGAAAA CAGTGTGAAGACAGATGCTGAAGAAAAATCAGCTCATGCTAACCAGGAGGATCAAACAAC ATCTGCATCTGATACCAACAAAGGAGAAAGTGATGTGGATGCACAGGGTAATAATGTAAC AGTTGATGATAGGGGCAGTGCCGTGAGTTCTGGAGATGAAGGCAAATCTTCTAATGATTT TCCCACCAGATTAACAGTAAATTCAAAGGACGAGCCAACTTCCTGCCCAGAAATGAGTTC AGGCGTGCAACAAT
Homology of Contig U35_28706 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g14960.1 | 1418 | 8e-77 | |
| Arabidopsis v10 | None |