barSeed - Barley Seed Development Database

Probe CUST_31941_PI390587928

Source Contig U35_893

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31941_PI390587928	Hv_44K_v2	CGGGAATCGGGATGGATCATGTATCAAGTGTTAAATGGTAATTATGCTTGGCTTACTTTT	1429	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.642	2.829	1.214	0.686	0.322	0.189
Raw	744.276	1330.719	474.992	430.950	67.819	46.202

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44630.1	2078	2e-24	1937 - 1996	100	60 / 60	plus	ABC06091
MLOC	MLOC_44630.2	1450	2e-24	1323 - 1382	100	60 / 60	plus	ABC06091
JLOC1	JLOC1_28937.1	2023	8e-25	1825 - 1884	100	60 / 60	plus
Harvest21	ABC06091	1476	3e-25	1400 - 1459	100	60 / 60	plus	ABC06091
Harvest35	U35_893	1566	3e-25	1430 - 1489	100	60 / 60	plus

Contig Sequence (1566 bp)

>U35_893 1566 Hv_44K_v2
TCGAGCACTGTTGGCCTAGAGCTCATCACTCCCGCACTCAACACTTCCGCCACCTTGGGC
TCCTCCTCCATAGCTACTAGCAAAGCTGAGCTAGTAGAAGGTAGCAGCCAGCCAGCCAGC
CACAGGGCTAAGATGGCGTCGCCCGCCTCCTTCCTCCCGCTGCTTTTGCTCTTGCTCGCG
GCGGCGGCGCATTGCTTGCCGCTGCCCCAGCGGTGCCCGCAGGCCGACCGGCAGGCGCTG
CTCCGGGTGAAGCAGGCGCTGGGCAACCCGGCGACGCTGAAGACGTGGTCGCCGGCGTCG
GCGGACTGCTGCACGTGGGACCACCTCCGGTGCGACGAGGCCGGGCGCGTGAACAACGTC
TTCATCGACGGGGCCGACGACGTGCACGGCCAGATCCCGTCCGCTTTGGCCGGGCTGACG
GCGCTCATGTCGCTGTCGCTGTTCCGCCTCCCGGGGCTCCAGGGCTCCATCCCGGCCTGC
CTCACCTCCCTCTCCAAGCTGGAGTTCCTCACCATCTCCCACACCAACGTGTCCGGCCCC
ATCCCGGAGTCCCTGGCGCGGCTCCACAGCCTCGACTCCGTGGACCTCTCCAACAACAAG
CTGACGGGATCCATCCCCAACTCCTTCGCCGACCTGCCGAGCCTCCGGTCGCTGGACCTC
CGCCGGAACCAGCTCACCGGGCCCATCCCGGCCAGCCTCGTGCAGGGGCAGTTCATGTCG
CTGGTGCTCTCCTACAACCAGCTGACGGGCCCGATCCCGCGCGACGACGCGCAGGACGAG
ATCAACACCGTGGATCTGTCGCACAACCAGCTGAGCGGCGACGCCTCCTTCCTCTTCTCC
GAGGCGCGGCCCATCGGCAAGGTGGACCTGTCCTACAACAACCTCGACTTCGACCTCAGC
AAGCTCAAGTTCCCCAAGGAGCTCACCTACCTGGACCTCAGCCACAACCGCATCAGGGGC
ACCGTGCCCAGGTCGCTGGAGGCGCTGTCCACCCTGCAGACGCTGGACCTCAGCTACAAC
TGCCTCTGCGGCCCGCTCCCCAAGCTGCACGGCGTCATGCGGCACGGATGCAAGCCCTAC
GAGCACAACCTCTGCCACCGCGGGGCGCCGCTCGAGAGCAGCTGCCACCAGCTCTGAGCG
ACCTCGCCGCCGGCAGAAGGCGGTACATTATATGACGAGTGGTGTCTGTCAGTGTTGGCG
TTCTCGTGCGCGTACGTGCGTGTGTACGAGCTACGAAGGACGGTGCTTTGGGGCTTAGTA
TACTAGTGGAGTGGAGTACCGCGCTGGTACTGTGGTAATGCCTGACAAGCGCGGTCCTTG
AGAGCTGCTAGCTTTGTGTACGACCAAACGATAGAGATGTGTGCGTGCTGTGTGTGTGTG
TACCGTCTGGAGATGCGCTTCCCCGAGAGAGTGTGTGTGTGCCCGTGTTCGGGAATCGGG
ATGGATCATGTATCAAGTGTTAAATGGTAATTATGCTTGGCTTACTTTTAAAAAAAAAAA
AAAAAAAAAAATGTTGGTTGGTTTGTACTACTCGGGAATTTTGGGAATTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_893 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g38130.1	333	1e-173	protein\|polygalacturonase inhibitor 1 precursor, putative, expressed
Brachypodium v1_2	Bradi1g24230.1	339	0.0
Arabidopsis v10	AT5G06870.1	330	1e-64	\| Symbols: PGIP2, ATPGIP2 \| polygalacturonase inhibiting protein 2 \| chr5:2133941-2135016 FORWARD LENGTH=330