- Probe CUST_31937_PI390587928
- Source Contig U35_896
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31937_PI390587928 | Hv_44K_v2 | TACCTGGCTACGGTGGACGTCGACCCCAGTTCAGCGACGTACTCCCAGGTGATCCACAAG | 331 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363526 | 2033 | 2e-23 | 358 - 415 | 100 | 58 / 58 | plus | ABC02837 ABC40926 |
| MLOC | MLOC_55348.2 | 1639 | 2e-23 | 339 - 396 | 100 | 58 / 58 | plus | ABC02837 ABC40926 |
| MLOC | MLOC_55348.1 | 1861 | 2e-23 | 519 - 576 | 100 | 58 / 58 | plus | ABC02837 ABC40926 |
| MLOC | MLOC_81840.1 | 2276 | 9e-22 | 1550 - 1607 | 98 | 57 / 58 | minus | ABC02837 ABC17119 ABC35045 |
| MLOC | MLOC_81840.5 | 2783 | 9e-22 | 2062 - 2119 | 98 | 57 / 58 | minus | ABC02837 ABC17119 ABC35045 |
| MLOC | MLOC_81840.4 | 2901 | 9e-22 | 2167 - 2224 | 98 | 57 / 58 | minus | ABC02837 ABC17119 ABC35045 |
| MLOC | MLOC_81840.3 | 2172 | 9e-22 | 1446 - 1503 | 98 | 57 / 58 | minus | ABC02837 ABC17119 ABC35045 |
| JLOC1 | JLOC1_35688.1 | 2341 | 1e-23 | 404 - 461 | 100 | 58 / 58 | plus | |
| JLOC1 | JLOC1_54437.6 | 1853 | 5e-22 | 672 - 729 | 98 | 57 / 58 | plus | |
| JLOC1 | JLOC1_54437.5 | 2181 | 5e-22 | 672 - 729 | 98 | 57 / 58 | plus | |
| JLOC1 | JLOC1_54437.3 | 2842 | 5e-22 | 668 - 725 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC40925 | 498 | 3e-25 | 332 - 391 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02839 | 523 | 4e-24 | 320 - 377 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC02837 | 1947 | 4e-24 | 256 - 313 | 100 | 58 / 58 | plus | ABC02837 |
| Harvest21 | ABC13759 | 1008 | 2e-22 | 578 - 635 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC02840 | 673 | 2e-22 | 542 - 599 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_896 | 498 | 3e-25 | 332 - 391 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32143 | 451 | 4e-24 | 359 - 416 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_898 | 647 | 4e-24 | 282 - 339 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_894 | 2089 | 4e-24 | 256 - 313 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_20312 | 1025 | 2e-22 | 595 - 652 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_897 | 673 | 2e-22 | 542 - 599 | 98 | 57 / 58 | plus |
Contig Sequence (498 bp)
>U35_896 498 Hv_44K_v2 AGAACGCAAGAGAAAATCAACAGCTCGCTGCCTCCGGTGAGTCAGCACAGCACCCAGCCC GGCTCCCCCCTCCTCCCCCCCTGCTTCTCTCCGGCACGGTGGCTCACCGTTTTCCTTCTT CCAGGGGGTTCGTTCAGGCGTCCTGAGATCACACATGGCCGCGGCGGTGCCGGCGGCGGC GAAGGCGAACGGCGCCGGCGCCGGTGCGGGGTGCTGCGCGGCGAAGGGCCCCGGGTACGC CACGCCGAGGGAGGCCATGGAGAAGGGCCCGCGCGAGGGGCTCCTCTACGTCACCTGCGT CTACAATGGCACTGGAATCGACAAGCCGGATTACCTGGCTACGGTGGACGTCGACCCCAG TTCAGCGACGTACTCCCAGGTGATCCACAAGCTCCCGGCCACCCACATCGGCGACGAGCT GCATCACTCCGGCTGGAACGCCTGCAGCTCCTGCCATGGCGATCCCTCCACGAGCCGGCG CTTCTTGATTCTTCCTTC
Homology of Contig U35_896 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |