barSeed - Barley Seed Development Database

Probe CUST_31934_PI390587928

Source Contig U35_28713

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31934_PI390587928	Hv_44K_v2	CTCCGCAAACAGATATCCACCAAGAAGCGCCGACGCAAGAAGGACTCTGCTACCGGCTTA	513	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367148	3542	2e-24	1153 - 1212	100	60 / 60	plus	ABC20954
MLOC	MLOC_79089.1	2703	2e-24	237 - 296	100	60 / 60	plus	ABC20954
JLOC1	JLOC1_52704.1	3040	8e-25	554 - 613	100	60 / 60	plus
Harvest21	ABC27731	573	3e-25	514 - 573	100	60 / 60	plus
Harvest35	U35_28713	573	3e-25	514 - 573	100	60 / 60	plus

Contig Sequence (573 bp)

>U35_28713 573 Hv_44K_v2
GTGCTGGCGGACGCCCTCGCCACGTTCCTCTCCATGTACCCCAAGTACGCCTCGTCGGCG
GACGTCGACCGCCTCCGCGCCGGCGAGTACCCGCACCTCGACAAGGCCTGCCTCGACTAC
TGCGGCTTCGGCCTCTTCTCCTACCTCCAGAGCTGCAGCCCCGCCGACTCCTCCGTCTCC
TTCACGCTCTCCGAGATCACCGCCAACCTCAGCAACCACGCGCTCTACGGCGCCGCCGAG
AAGGGCACCGCCGAGCACGACATCAGAACCCGCATCATGGATTACCTCAACATCCCGGAG
TCAGAGTACTGCCTCGTCTTCACCGTCAGCCGCGGCTCCGCCTTCCGCCTGCTCGCCGAG
TGCTACCCCTTCGCCACCAACAAGAAGCTTCTCACCATGTTCGACCACGAGTCCCAGTCC
GTGAACTGGATGGCTCAGTCCGCCAGGGACAAGGGGGCCAAGGCCTACTCCGCCTGGTTC
AAGTGGCCCACCCTCAAGATCTGCTCCACCGAGCTCCGCAAACAGATATCCACCAAGAAG
CGCCGACGCAAGAAGGACTCTGCTACCGGCTTA

Homology of Contig U35_28713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55704.1	1060	1e-116	protein\|expressed protein
Brachypodium v1_2	Bradi1g07540.1	931	1e-120
Arabidopsis v10	AT4G37100.1	896	2e-90	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr4:17479173-17481863 REVERSE LENGTH=896