- Probe CUST_31933_PI390587928
- Source Contig U35_898
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31933_PI390587928 | Hv_44K_v2 | GGTGATATAATGATCTCTTGCCTGGGAGACAAGGAGGGAAATGCTGCTGGCAATGGCTTC | 587 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.075 | 0.176 | 1.198 | 2.290 | 1.171 | 1.372 |
| Raw | 64.476 | 227.819 | 1408.023 | 4268.010 | 790.986 | 990.241 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363526 | 2033 | 2e-24 | 664 - 723 | 100 | 60 / 60 | plus | ABC02837 ABC40926 |
| MLOC | MLOC_55348.2 | 1639 | 2e-24 | 645 - 704 | 100 | 60 / 60 | plus | ABC02837 ABC40926 |
| MLOC | MLOC_55348.1 | 1861 | 2e-24 | 825 - 884 | 100 | 60 / 60 | plus | ABC02837 ABC40926 |
| JLOC1 | JLOC1_35688.1 | 2341 | 8e-25 | 710 - 769 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02837 | 1947 | 3e-25 | 562 - 621 | 100 | 60 / 60 | plus | ABC02837 |
| Harvest35 | U35_898 | 647 | 3e-25 | 588 - 647 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_894 | 2089 | 3e-25 | 562 - 621 | 100 | 60 / 60 | plus |
Contig Sequence (647 bp)
>U35_898 647 Hv_44K_v2 CTGCTCCCTCTGCCCCTCTCGCAGAACGCAAGAGAAAAACCAACAGCTCGCTGCCTCCGG GGGTTCGTTCAGGCGTCCTGAGATCACACATGGCCGCGGCGGTGGCAGAAGCGGCGGTGC CGGCGCCGGCGAAGGCGAACGGCGCCGGCGCCGGTGCCGGGTGCTGCGCGGCGAAGGGCC CCGGGTACGCCACGCCGAGGGAGGCCATGGAGAAGGGCCCGCGCGAGGGGCTCCTCTACG TCACCTGCGTCTACAATGGCACTGGAATCGACAAGCCGGATTACCTGGCTACGGTGGACG TCGACCCCAGTTCAGCGACGTACTCCCAGGTGATCCACAGGCTCCCGGCCACCCACATCG GCGACGAGCTGCATCACTCCGGCTGGAACGCCTGCAGCTCCTGCCATGGCGATCCCTCCA CGAGCCGGCGCTTCTTGATTCTTCCTTCGTTGCTGTCCGGTCGCGTGTATGTGGTCGACA CGGCGAAGGATCCGAGGGCGCCTGCCCTGCACAAGGTTGTCCAGGCCGAGGACATCGCTG AGAAGACCGGGCTTGGGTTCCCTCACACATCCCATTGCCTTGCAACCGGTGATATAATGA TCTCTTGCCTGGGAGACAAGGAGGGAAATGCTGCTGGCAATGGCTTC
Homology of Contig U35_898 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g68770.1 | 483 | 1e-97 | protein|selenium-binding protein, putative, expressed |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | AT4G14030.1 | 490 | 1e-75 | | Symbols: SBP1 | selenium-binding protein 1 | chr4:8098121-8100165 REVERSE LENGTH=490 |