barSeed - Barley Seed Development Database

Probe CUST_31924_PI390587928

Source Contig U35_16744

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31924_PI390587928	Hv_44K_v2	TAGCTATAGCCGGGGAGATGACTCTAAATAAATAAAATGCTGATCCTTGCCGGCAAAAAA	1818	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.452	5.212	1.306	0.669	0.158	0.267
Raw	527.986	1027.479	210.531	189.301	13.544	26.784

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_41644.2	1881	2e-21	1763 - 1816	100	54 / 54	plus
JLOC1	JLOC1_41644.1	2072	2e-21	1954 - 2007	100	54 / 54	plus
Harvest21	ABC07534	1890	3e-25	1819 - 1878	100	60 / 60	plus	ABC07534
Harvest35	U35_16744	1890	3e-25	1819 - 1878	100	60 / 60	plus

Contig Sequence (1890 bp)

>U35_16744 1890 Hv_44K_v2
GCTCAGACCAACCCTCGCTAGCTCCTAGCTGCATCTGCTGCCAAGCTCCACCTGCTGTCT
GCTACCTCGTCGGGTTGAAGGTCGTCCAAGAGCATTTTGAAGGTTGACAGTAACCTTCGG
TTGTGGGAAGATGTATCGGGCCAAGAGAGCCGCATTGTCACCAAAGGTGAAGCGCCGTGT
CGGCAAGTATGAGCTCGGCCGCACCATCGGGGAAGGGACATTTGCAAAGGTCAGGTTCGC
AAAGAACACTGAAACTATGGAGCCTGTTGCTATCAAAATCCTCGACAAGGAGAAGGTTCA
GAAGCTCAGATTGGTTGAACAGATTAGGCGCGAAATTTGCACTATGAAGTTAATAAAGCA
TCCTAATGTTGTCCGACTGCACGAGGTGATGGGAAGTAAAGCAAGAATTTTCATTGTTCT
GGAATACATTACTGGAGGGGAACTCTTTGATACCATTTATACCAATGGAAGGTTGAAAGA
AGAGGAAGCACGCAAATACTTCCAACAACTGATAAATGCCGTTGATTATTGCCACAGTAG
GGGTGTGTATCACAGAGATTTGAAGTTAGAAAATTTGTTGCTTGATGCTGCTGGAAACCT
CAAAGTGTCCGACTTCGGTTTAAGTGCTTTAACTGAGCAAGTCAAGGCTGACGGTTTGCT
GCACACAACATGCGGAACTCCGAACTATGTTGCTCCTGAGGTGATTGAGGATAGAGGTTA
TGATGGCGCAGCTGCAGATATCTGGTCTTGCGGGGTAATCCTTTTTATTCTGCTTGCCGG
GTTTTTACCTTTCGAGGATGAAAACATCATCGCTCTTTATAAAAAGATCTCAGAGGCTCA
GTTCACGTGCCCCTCTTGGTTTTCTACTGGAGCTAAGAAGTTGATTTCCAGAATTCTGGA
CCCTAATCCTTCAACTCGTATGACCATTCCTCAGATACTGGAGGATCCTTGGTTCAAAAA
GGGATTCAAGCCACCTGTTTTTGATGATAAGTATGAAACTAGTTTCGATGATGTCTATGC
TGCATTTGGAGACTCAGAGGACCAACATGTGAAAGAGGAGACTGAACATAAGCCAACCTC
AATGAATGCATTTGAACTGATTTCGCTGAATCAGGGACTGAATCTGGACAATTTATTCGA
GGCAAAGGAGGAGCATAAAAGAGAGACAAGATTCACCTCGCAATGCCCTCCAAAAGAAAT
CATCAGCAAGATTGCTGAAGCTGCAAGGCCACTTGGATTTGACATTCAGAAGAAAAACTA
CAAGATGCGGATGGAGAACCCGAAAGCAGGTAGAAAAGGCAATCTCAATGTTGCAACTGA
GGTGTTTCAAGTAGCTCCATCCCTACATGTGGTTGAGCTGAAAAAGGCGAAGGGGGATAC
TCTGGAATTTCAAATGTTCTACAGATCTCTCTCGACCCAGCTCAAGGACGTAGTTTGGAA
GTGCGGCGGCGAGGTAGAAGATAACAGCACCGCGGCATGAAGCACATTTTGAGACTCACC
GACCGATCGGCGCTGGTTTTCCATGTACATAGTTCCTTGATATGTGGGATGGGGCATGGA
GGGTGCGGAATGGATTGTGCAGACCAAGTTCTTTTGTTCGTTCGTTTGTTGATGATGATG
ATCGAATAGGCTCCGATGAAACAGCGGGCGCGCAGCCTGCTGTGGAAGAGCCTATCTATG
GCTTCGTTAGTTTGCTTATCATATTCATGGTCCAGAGGCGAAAGGCCGTATTGTTCTAAG
ATTGTATTGGTAGGAGGGTACATTGAACAGTGCAATGTGTTGAACTTTGTTTGTGCTGTA
GTACTTGTAGCATTGTAGTAGCTATAGCCGGGGAGATGACTCTAAATAAATAAAATGCTG
ATCCTTGCCGGCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16744 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g20380.1	450	protein\|CAMK_KIN1/SNF1/Nim1_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g64010.1	449
Arabidopsis v10	AT5G21326.1	439	Ca2+regulated serine-threonine protein kinase family protein \| chr5:7218081-7221743 FORWARD LENGTH=439