barSeed - Barley Seed Development Database

Probe CUST_31922_PI390587928

Source Contig U35_16746

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31922_PI390587928	Hv_44K_v2	CATCTCTTGGTGATAACCCGATAGATAAGAGTTATGTGTGGTTTGCTGTGAGTTAAAAAA	3998	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.397	1.763	1.222	0.787	0.275	0.245
Raw	1538.693	3105.629	1827.833	1829.093	228.472	221.545

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54939.5	2093	9e-22	2005 - 2059	100	55 / 55	plus	ABC07114
JLOC1	JLOC1_35396.2	2655	5e-22	2473 - 2527	100	55 / 55	plus
JLOC1	JLOC1_35396.1	2755	5e-22	2573 - 2627	100	55 / 55	plus
Harvest21	ABC07114	2429	3e-25	2359 - 2418	100	60 / 60	plus	ABC07114
Harvest35	U35_16746	4069	3e-25	3999 - 4058	100	60 / 60	plus

Contig Sequence (4069 bp)

>U35_16746 4069 Hv_44K_v2
GCTTGTCTTAGCCATGTATATAAAGAAGGTTATAATCGAAGGGTTTAAAAGCTACAGGGA
GGAGACCTCGACAGAACCTTTCAGCCCCAAAGTTAACGTAGTCGTTGGTGCAAATGGATC
TGGCAAATCAAACTTTTTCCATGCTATACGCTTTGTCCTGAGTGACATGTTTCAGAACCT
GCGCAGCGAGGACAGGGGAGCTCTTCTCCATGAAGGTGCTGGACACTCAGTTGTATCTGC
TTTTGTCGAGATAATTTTTGATAATTCAGACAACCGTATTCCAGTTGATAAAGAAGAGGT
ACGCTTGCGAAGGACAGTTGCTTCAAAGAAGGATGAATACTACTTGGATGGAAAACATGT
CAGTAAAACTGAAGTCATGAATCTGCTGGAGAGCGCTGGTTTCTCTCGATCTAATCCATA
CTATGTTGTCCAGCAAGGAAAGATTGCATCCCTTACTCTAATGAAAGATTCTGAACGACT
GGATCTTCTCAAAGAGATTGGTGGTACACGTGTTTATGAAGATAGACGTCGGGAAAGCTT
GAAAATAATGCAAGAAACAGCCAATAAAAGGAAGCAGATTGATCAAGTTGTCCGCTACCT
GGAGGAGAGACTGAGAGAACTTGATGAAGAGAAGGAGGAACTAAAGAAGTACCAGCAGCT
GGACAAACAGAGAAGATCACTTGAGTATACTATATTGGACCATGAACTAAATGATGCTAG
AAATGAATTAGCTTCGATGGATGATAATCGAAGACAAATTTCTGAAAGGATGTCACAAGC
GGACAATGAAGTGGTAGAGTTACGTGAGAAGGTCAAAAGTTTGGAGAAAGAAATAAAAGC
CTCTACTAAAGGGATAAATGAAACCAAGTCTGAAAAGGAAGATGCAGAGAAGAAGCGTAC
TGAAGCACTAAAGGTAGTTTCTCAGATTGATCTTGATCTGAGAGATTTAAAAGACAGAAT
TTCAAGTGAAAAACGAGCAAAGGATGAAGCCGTAAGGGAATTAAATAGTATGAGGAAAGA
AAGTGAAAAGTCAAAGTCTGAATTGGCTCAAATTAGTAAGGTGCACGCGGCCAAATTGAA
GGAAGAGGAAGATATATCGAAAAGTATAATGGACCGAGAGAAGCGGCTGAGTATATTGTA
CCAAAAGCAGGGGAGGGCAACTCAATTTAAGAATGAGGCTGCCAGAGATGAGTGGCTTCG
GAAAGAAATTCATGATCTTGAGCGTGTACTTTTATCAAATAGAAAGCAGGAAAGCTTACT
TCAAGATGAAAGTCAGAAGCTTAAAGACGAAATTAATAAGTTGACAGACCACATTGAATC
TCGCAGAAGTGAATCAAGCAAGTTAGAGTCTGCTCTTGCAGACAAGCAAAAGCATCACAA
TGACTTCACGAAGCAGAAAAATGCACTTCAAGATGAAAGGAAATCATTTTGGAAGGAGGA
AAATAGTGTGACAGCTGAAATCGATAGGCTAAAGGAAGATCTTGTGAAGGCACAAAAGAG
TTTGGACCATGCAACGCCTGGGGATATCAGGAGAGGCCTGAATTCTGTTAGCAGAATCAT
CAGGGACCATGGTATTGGAGGAGTTTTTGGTCCAGTGTTAGAACTGGTTGACTGCGAAGA
GAAGTTTTTACAGCTGTTGAGGTCACTGCTGGGAATAGCTTGTTCCATGTGGTGGTTGAA
AATGACGATATATCGACAAGGATAATTCAGGTATTGACTCGAGAAAAAGGTGGACGGGTG
ACTTTCATACCACTGAATAGAGTGCACGCTCCGAACGTCAATGTTCCACAGAGCTCTGAT
TTTGTTCCATTGTTAAAGAAGTTAAAGTTTCGTGCTGAGCATCGTCGCGCTTTTGAACAG
GTTTTTGGTAGGACAGTTATATGCCGAGACCTGGAAACTGCGACCAGAGTTGCACGCAGC
AATAGTCTAGATTGCATCACACTTGATGGTGATCAAGTAGCTAAAAAGGGTGGCATGACA
GGAGGTTTCTATGATTCCAGACGCTCAAGACTGAAGTTTGTAAAAGTAATCAGGGACAAC
AAAGCAGAAATCGAAAAAAAGACGGCACATCTAGAGAACGTGGGAAAAAAGTTGAAAGAT
ATAGATAAGAAAATTACAGATTTGATTACCAAACATCAGCAAATGGACGCTGAACGTGAT
CATGCCAAGTCGGAGTTGGAACAGTTTAAAGCTGATATTGCCAGTGCAACGAAGCAAAAG
GGATCACTGGAGAAAGCCCTTGCAAAGAAGGAAAAATCACTCGCGAACATCCGCAACCAA
ATTGAGCAAATCCAATCTGGCATTGCAATGAAAAATGATGAGATGGGCACAGAACTGATT
GACCAGCTAACTTTAGAAGAAAGAGATCTCCTTTCGCGACTGAATCCTGAAATTACTGGA
TTGAAGGAGAAGTTCCTCTCGTGTAAAAACAGTCGCATTGAGATTGAAACAAGAAAGGAA
GAACTGGAGAACAATTTGTCAACTAATCTTATGAGGCGTCAGAAAGAGTTGGAAGCAATA
ATTTCATCTGCAGATTCTAAAACCTTGCCTGTTGAAGTCGAAGCAAAAGAGCAAGAATTG
AAAGAGTCTAAGAGGACTCTTGATGAGGCGACAACAGTACTGAAAGCTAATGTCGATGCT
ATTAATGCACATACAAGACAGATGGACCAACTGAAAAAACAAAGGGATGATCTGAAGGCT
CTTGAAGCTAATTTGGAGCAGACGGTGCAAGATGGGGCAAAAGACTTGGAACAGTTGATG
AGCAATAGGAGTACGTATCTTGTCAAACAAGATGAGTGTATGAAGAAAATCCGTGATCTG
GGCTCATTGCCTGCTGATGCTTTCGAAACGTACAAGAGAAAAAACAAGACGCAGCTACAG
AAGCTACTCTATGACTGCAATGAGCAGTTGAAGCAATTTAGTCATGTCAACCAAAAGGCT
CTTGACCAATATGTGAACTTCACTGAACAGCGCGAACAACTGCAGAGAAGACGGGCTGAA
CTTGATGCTGGTGACGAGAAAATTAGAGAGTTGATATCAGTTTTAGACCAAAGGAAGGAT
GAATCAATTGAGCGCACATTTAAAGGAGTTGCAAGGCACTTCCGCGAAGTGTTCTCTGAA
TTAGTGCAAGGTGGCCACGGATACTTGGTTATGATGAAGAAAAAGGATGGTGATGCTGGC
GATGATGACATGGATGAGGATGCGCCTCGTGAACCAGATCCTGAAGGGAGGATAGAGAAG
TATATTGGTGTGAAAGTCAAGGTTTCCTTCACTGGCAAGGGAGAAACTCAGTCCATGAAG
CAGTTGTCTGGAGGGCAGAAGACAGTGGTGGCCTTAACACTGATCTTTGCTATCCAACGA
TGTGACCCAGCTCCGTTCTACCTCTTTGATGAGATTGATGCTGCTCTGGATCCTCAGTAC
AGAACGGCTGTCGGGAGCGTGGTTCGACGTCTGGCTGACATGGCGGACACCCAGTTCATA
GCCACCACATTCAGGCCGGAGATCCTGAAGGTCGCGGACAAGATCTATGGCGTGACGCAC
AAGAACAGGGTGAGCTTCATCAACGTGGTGTCCAAGGAGCAGGCCATGGACTTCATCGAG
CACGACCAGACGCACAACGCCAGCTGAGGCCGACCGAGAGGCACAAGGAGCTGCTGTGCA
TGTTGTTCCTCTTTACATTTTGAGTTACCTTGGAAGCCCATCATCGTACGGAGGAGCGGC
TTGCAACGTCGCCATCTCTGTTTGTTTCTTGTAGCAAGATGTTTACACAGGAAACGAAAG
ATACATGGGCTCATGTTGCCGTTCGTCTACCCCTGGACATTGTATGCCACTGTTAATGTA
GCTGTGTATATTTAGTTAGCCTTTGGATTGTTAACTTGAAGAGTGCGTAGGAGCCTTTGG
ATTGCTAAAACTTATTTAAGTATGCTTAGGGAGCATTTGCGTGATTGGAGATGTGTGTTT
TTCGAATTTGTACTGCATTACTGCAAAATTTGGTCCATCATCTCTTGGTGATAACCCGAT
AGATAAGAGTTATGTGTGGTTTGCTGTGAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g04050.1	695	protein\|chromosome segregation protein, putative, expressed
Brachypodium v1_2	Bradi1g17900.1	1203
Arabidopsis v10	AT2G27170.1	1204	\| Symbols: TTN7, SMC3 \| Structural maintenance of chromosomes (SMC) family protein \| chr2:11609319-11617064 REVERSE LENGTH=1204