barSeed - Barley Seed Development Database

Probe CUST_3191_PI390587928

Source Contig U35_10964

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3191_PI390587928	Hv_44K_v2	CGAGGGGCCCGTGCTGCTCTGGGCCCGCCGCCTCTGCGTCTACTACGCGCTCATCCACAT	216	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.630	0.801	1.188	1.310	1.080	1.074
Raw	44.976	80.366	115.153	190.246	57.539	63.087

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371123	1743	7e-23	980 - 1039	98	59 / 60	plus	ABC11411
MLOC	AK360169	1296	7e-23	296 - 355	98	59 / 60	plus	ABC11411
MLOC	MLOC_67781.1	4549	7e-23	30 - 89	98	59 / 60	plus	ABC10074 ABC11411
MLOC	MLOC_67780.1	2129	7e-23	30 - 89	98	59 / 60	plus	ABC10074 ABC11411
JLOC1	JLOC1_44788.1	4216	4e-23	33 - 92	98	59 / 60	plus
Harvest21	ABC22875	275	1e-24	217 - 275	100	59 / 59	plus
Harvest35	U35_10964	276	3e-25	217 - 276	100	60 / 60	plus

Contig Sequence (276 bp)

>U35_10964 276 Hv_44K_v2
CAGCGAATCTCTGCCAATCGCCATGCTCGCCTACCTCCTCCACGCGCCCGCCGCCGCCGC
CGCGGCGCCCAGCCCGCTCGCCCTCCGCGGGCCGCTGGCGGCCGCGTCCAAGACCCCCTT
CCTGCCCCCCTCCGTCGCCCGCCCGCACAGGCGCGCCGCCGCGGCGGCCGGCGCCTTCTC
CGCCTGCGCCGTGGGCCCCATCGCGGCCTCGCTGCTCGAGGGGCCCGTGCTGCTCTGGGC
CCGCCGCCTCTGCGTCTACTACGCGCTCATCCACAT

Homology of Contig U35_10964 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None