barSeed - Barley Seed Development Database

Probe CUST_31919_PI390587928

Source Contig U35_16749

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31919_PI390587928	Hv_44K_v2	TAAAAGCTTACAACCGTCTGTATAAGGTGTACCTAACCTATCTTATTAGTTACTGTACTG	1961	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365864	3794	2e-24	3726 - 3785	100	60 / 60	plus	ABC07103
MLOC	MLOC_55817.1	2984	2e-24	22 - 81	100	60 / 60	minus	ABC07103
MLOC	MLOC_55817.2	3045	2e-24	19 - 78	100	60 / 60	minus	ABC07103
JLOC1	JLOC1_36042.1	2686	8e-25	2570 - 2629	100	60 / 60	plus
Harvest21	ABC07104	687	3e-25	24 - 83	100	60 / 60	minus
Harvest21	ABC07103	2042	3e-25	1962 - 2021	100	60 / 60	plus	ABC07103
Harvest35	U35_16749	2046	3e-25	1962 - 2021	100	60 / 60	plus

Contig Sequence (2046 bp)

>U35_16749 2046 Hv_44K_v2
AACAAGTCCAAAGCACAGGAAAGTTCTCCAGCACATGCTGATTTTGGAAAAGAAGCCATG
GATACGGTGGACACGGCAGAAAACGCAATAACTCAGCAATCGGACTCGGCATCAAAGTCT
AAAAGCCGGCGCAAGTTAGGCATTTTGAAAGCACTTGCTCCAGAGAGTAAGCCTGCTGAG
GGCGCTGATGATTCGTGCGATAATGTTTCCTACCCAGTGAATAACGTTATTGAACTCAAG
GACAAGCTCTCTCACTGCTTATCTTCACGTTTCCTCCGGAGGTGGTGCATGTCTGAGTGG
TTCTATAGTGCAATTGATTATCCATGGTTTGCGAAGAGTGAATTTGTTGAGTACTTGAAT
CATGTAAAGCTGGGTCATGTGCCAAGGCTGACTCGTGTCGAGTGGGGTGTTATAAGGAGT
TCTCTTGGAAAGCCACGTCGATTGTCAAAGCAGTTTTTACAAGAGGAGAGGGAAAAGCTT
TCTCAGTATCGCGAGTCAGTCAGACAACACTATGCTGAACTTCAGTCTGGTGTTCGAGAA
GGTCTACCAACTGATCTTGCTCGGCCCTTAGCAGTTGGGCAGCGTGTTATAGCCCGTCAT
CCCAAAACAAGAGAACTTCATGATGGGAGTGTTTTGACTGTCGACCGTACTCGCTGTCGG
GTTCAATTTGATCGGCCTGAGCTGGGTGTTGAATTTGTGATGGATATTGATTGTATGCCG
TTACACCCACTGGAAAATTTCCCCGAGTCTCTCAGACGCCAAAATATCGTGAATAAATAC
TACAGCAGCTTCTCAGAAGTAAAATTTGAGGATCGACCCAAAGAGTATGGTGGTGGAGGC
GCAGCAAGGTTCTTACCAAATGGGGACACATTTGATTCGATTGCACAGGCCAAAACTACA
GCAAACGAGGCTGCAGCCGCAGCACAACAGGCAATGTACGGCCAGCCATGTACACTGTCA
CAGATTCAGGAGAGAGAAGCAGATATAAGGGCTCTTGCGGAACTGTCACGTGCTCTCGAT
AAAAAGGAAGCCTTGCTGGTAGAGTTGAGGCACATGAATGAAGAAGTGTCTGGAAAGCAA
AAGGACGGGGAAACCATTAGAGATTTGGAGCACTTCAGGAAGCAATACGCCATGGTGCTC
GTACAGCTGAGAGATTCAAATGATCACGTGGCTTCGGCCTTGCTTTGTCTGCGGCAACGG
AACACATTTCATGGGCATCCAGCACAGCCATATCCTACTAAATCAACGGAAAATGGTGGA
GCTTTTAACAGAACACCAGACCCATCTAGTAACCTTTTTGGTTATATTAATCAGGAGTCT
GGATCTCAAGTGATGGAAATTATCGACACTTCAAGGTCCAAAGCTAAAACGATGGTTGAT
GTCGCTATTCAGGCAATGTGCAAAGTAAGTGAAGGAGAGAACGCATTTGCCAAAATAGGG
GAAGCACTAGACAATCTGAACCTCCGTGGCACCGGCTCTGGTTCCAGCATACTAGGCATA
AGGCGGATACCACCTGATTCCGGACAGGCAAATTCAGATAACAGCGCCTCTGGCCGCTTC
GATCCTGCCGCAGCAGCGACCAATAACATTTCCAGCCCAAGAGTATTGCCCAACGGCAGC
GACTCCGAAGCCCAGTTCCCGTCAGAGTTGATTTCGTCGTGCGTAGCGACCATCCTAATG
ATACAGAACTGCACGGAGAAGCAGTATCACCCCGCGGAAGTGGCGCACATCCTCGACTCA
GCGCTGTCGCGGCTGCAACCGTGCAGCTCGCAGAACGTGCCCATCTTCAGGGAGATCGAG
ATGTGCATGGGTATCATCAAGAACCAGATGCTGGCGCTGATACCCACCCCTAGTGGCTAG
CGTTCATGCATGGCCAACAACATTCTCTTCTTTTGTTATTTATATATACATATGTAGGAA
GAAAGAAACTTGACAATGATATCTGTATGTGGCTTGTATTCTAAAAGCTTACAACCGTCT
GTATAAGGTGTACCTAACCTATCTTATTAGTTACTGTACTGTATTAAAAAAAAAAAAAAA
AAAAAA

Homology of Contig U35_16749 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43800.1	1256	0.0	protein\|DIRP family protein, putative, expressed
Brachypodium v1_2	Bradi3g01340.4	1169	0.0
Arabidopsis v10	AT3G21430.2	1132	1e-152	\| Symbols: ATALY3, ALY3 \| DNA binding \| chr3:7544800-7552841 REVERSE LENGTH=1132