- Probe CUST_31918_PI390587928
- Source Contig U35_28720
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31918_PI390587928 | Hv_44K_v2 | AAAGTCGTTGATGAGCTTCTTGGACCAAACCCACGACAATTATGTGAGATATATATGCTG | 396 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.361 | 1.057 | 1.274 | 1.065 | 0.559 | 0.423 |
| Raw | 51.664 | 57.261 | 66.871 | 86.037 | 16.419 | 13.350 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53292.4 | 1199 | 2e-24 | 1032 - 1091 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_53292.2 | 1310 | 2e-24 | 1132 - 1191 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_53292.9 | 1102 | 2e-24 | 1018 - 1077 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_53292.6 | 1859 | 2e-24 | 1038 - 1097 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_53292.5 | 1399 | 2e-24 | 1016 - 1075 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_53292.3 | 2126 | 2e-24 | 1131 - 1190 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_53292.7 | 2128 | 2e-24 | 1032 - 1091 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_53292.8 | 2258 | 2e-24 | 1038 - 1097 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_53292.11 | 1980 | 2e-24 | 286 - 345 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_53292.10 | 1823 | 2e-24 | 614 - 673 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_53292.1 | 2273 | 2e-24 | 1136 - 1195 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_34223.4 | 1862 | 8e-25 | 999 - 1058 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34223.3 | 2152 | 8e-25 | 1031 - 1090 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34223.2 | 2281 | 8e-25 | 1036 - 1095 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34223.1 | 2157 | 8e-25 | 1036 - 1095 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27741 | 456 | 3e-25 | 397 - 456 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28720 | 456 | 3e-25 | 397 - 456 | 100 | 60 / 60 | plus |
Contig Sequence (456 bp)
>U35_28720 456 Hv_44K_v2 AACAGGACAGGCCGGTTCTCCCGTCCACTGGCCAATTCAGCCACAGACTGGCCATGCCTC CTGCTGGATGTGTTGTCAGGCGCAGCCGAGGAGGATTTTTTCCAGCCAAAGCTGGTGCTG AACAACGTCGATGCCCTGAGGAAGGCGATATGCGAGGACGATACAATGGTGCCTGCAGCT GTGTACCATGACAGCTTCATTTGGAGGGTGATAGCACTCGGTGCTAATGAACAGTGCTTA CCGGTCATTATGTCCACGTCAGATGGATACTATTCTTCCCAAGCATTCGTCGATTTTGGT TTTCCTAATATCTTCATTTCTCGTGAGACGTTTGGTTGGACACCACAAGAAGCTAAGCTG CATATGGTTTCTGAGTTCTTCAGTGAACAGGAGTGGAAAGTCGTTGATGAGCTTCTTGGA CCAAACCCACGACAATTATGTGAGATATATATGCTG
Homology of Contig U35_28720 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g12500.2 | 565 | 1e-96 | protein|EMB1381, putative, expressed |
| Brachypodium v1_2 | Bradi4g27460.1 | 563 | 3e-99 | |
| Arabidopsis v10 | AT2G31340.1 | 559 | 3e-67 | | Symbols: emb1381 | embryo defective 1381 | chr2:13361614-13364633 FORWARD LENGTH=559 |