- Probe CUST_31916_PI390587928
- Source Contig U35_28722
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31916_PI390587928 | Hv_44K_v2 | GCATGTGAAGATGTTGGATTTGAGTTATAATGGTCTGAGTGGGGAGATCCCCTCTGATCT | 407 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60385.1 | 3500 | 2e-24 | 2187 - 2246 | 100 | 60 / 60 | minus | ABC15860 ABC39727 |
| JLOC1 | JLOC1_39372.1 | 3443 | 8e-25 | 1198 - 1257 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27743 | 501 | 3e-25 | 408 - 467 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28722 | 501 | 3e-25 | 408 - 467 | 100 | 60 / 60 | plus |
Contig Sequence (501 bp)
>U35_28722 501 Hv_44K_v2 CGTGTGGTCTCCTTCAATCCCATCCTTGGTACTGTGACCACCCAATTGAGTGTTATGCCT AGGTTGAGGAGCCTGAACCTCAGCTCCAATTATTTGGTGGGTGCTGTCCCTCTAAGAATG GCTAGCTCTATGGAGGAGTTGGTGTTGTCTCGTAATAGTTTCAGTGATTCAATTCCAAGC AGTCTGTTCAGTTATTCAGACCTCACCCTGTTGGATCTTAGTCAGAACAGTTTCACTGGT GATGTCGTTGATGAGTTCCGGAAGCTGCCCAAGCTCAGGACCTTAATCCTTTCTGGTAAT AACCTGACTGGAGCAATACCGGCGAGCTTGTCGAATGTCATGACGCTCACTCGGTTTGCG GCTAATCAGAACAATTTTACTGGTTCTGTCCCTAGTGGTATTACAAAGCATGTGAAGATG TTGGATTTGAGTTATAATGGTCTGAGTGGGGAGATCCCCTCTGATCTCCTCGGCCCCGCG GGATTGGAGACTGTTGATCTC
Homology of Contig U35_28722 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |