barSeed - Barley Seed Development Database

Probe CUST_318_PI390587928

Source Contig U35_20048

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_318_PI390587928	Hv_44K_v2	GCATTGCGCGGTTCAAATATCGTGTCTATGAAGACTTGTTTACATCATAAAAATGTCATA	835	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21169.8	1592	2e-24	1152 - 1211	100	60 / 60	plus	ABC12778 ABC48214
MLOC	MLOC_21169.3	1512	2e-24	1072 - 1131	100	60 / 60	plus	ABC12778 ABC48214
JLOC1	JLOC1_14687.4	870	8e-25	638 - 697	100	60 / 60	plus
JLOC1	JLOC1_14687.2	1223	8e-25	991 - 1050	100	60 / 60	plus
JLOC1	JLOC1_14687.1	1162	8e-25	930 - 989	100	60 / 60	plus
Harvest21	ABC12778	1051	3e-25	970 - 1029	100	60 / 60	plus	ABC12778
Harvest35	U35_20048	917	3e-25	836 - 895	100	60 / 60	plus

Contig Sequence (917 bp)

>U35_20048 917 Hv_44K_v2
TGCTGGAGGCCGAGGGCGTCGCGCGCAACCCCCGCCCCGTCCACCACCGCATCCCCAACT
TCGATGGCGCCGCCGCCGCTGCCGATTCGGTTGGACGTGTTTCAGAATGCACAATGCGTG
AAGGTCAATCCGGATTCGCCTCAGAAGCAAGTTCGATTCTTAACACTCTCAGGCGATAAG
AAACTTCTGACCCCGCAACCACGGCTCAGGACAGGCTTCTTCTCCTTTCTACAATCTCAG
ATGATACCCACTGGATGCATTCCTGAAGCATGCACTTCGGTTGGCGCAGCCAAATATGGA
AGGCCGATAGGTCTAGATGAAATGATTAAAGTGGATCTGATTGTCATTGGGTCGGTTGCA
GTTGATCCAAGCACGGGAGCACGACTAGGGAAGGGTGAGGGATTTGCAGAGCTGGAATAT
GGGATGCTTCGTTATATGGGAGCTATAGATGATTCGACCATGGTAGTAACAACTGTACAT
GACAAGCAATTAGTGGATGACATTCCAGTTGAAAAGCTGCTAATTCATGATGTACCGGTT
GATATTATCTGCACCCCAACTCAGGTCATCTTAACAAATACTGCAATCCCAAAACCACAA
GGGATTTACTGGGAAAAACTATCTCCAGAAAAATTGGGCCAAATTCGAATTCTAAGAGAG
CTGAAGAGACGCATAGAGCAAGAGACAGGAACAATACTTCCTTGTGGGCCTTCTGAGAAT
CTACCACCAACAGCTCAGCGAAGAAGAAGAGGGCGGTAACTAAGTACGTGTATCATAACT
GCCTGATTCTATCGCATGTTATACATATATTTTGGAGAAAATTAAGGTATCTTAAGCATT
GCGCGGTTCAAATATCGTGTCTATGAAGACTTGTTTACATCATAAAAATGTCATATTGTT
TCAAAAAAAAAAAAAAA

Homology of Contig U35_20048 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g07020.1	351	3e-132	protein\|5-formyltetrahydrofolate cyclo-ligase, putative, expressed
Brachypodium v1_2	Bradi4g41650.1	349	1e-137
Arabidopsis v10	AT1G76730.1	354	1e-111	NagB/RpiA/CoA transferase-like superfamily protein \| chr1:28803033-28804703 REVERSE LENGTH=354