- Probe CUST_31898_PI390587928
- Source Contig U35_15648
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_31898_PI390587928 | Hv_44K_v2 | CTGCATTGTTGTGTTGCTTGTTCAATTGTGTCATTTGATTGTGAGAACTTCATGTTAATG | 544 | GeneList: lightcyan1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.165 | 0.202 | 0.928 | 1.573 | 1.312 | 1.738 |
| Raw | 7171.627 | 13115.747 | 55238.667 | 129139.666 | 43392.900 | 63157.667 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_25063.1 | 718 | 2e-24 | 329 - 388 | 100 | 60 / 60 | plus | ABC03692 ABC32845 |
| MLOC | MLOC_80463.1 | 294 | 7e-23 | 155 - 214 | 98 | 59 / 60 | minus | ABC03692 ABC32845 |
| JLOC1 | JLOC1_18486.1 | 783 | 8e-25 | 689 - 748 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_17172.1 | 534 | 8e-25 | 261 - 320 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53571.1 | 254 | 4e-23 | 116 - 175 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC32845 | 466 | 3e-25 | 337 - 396 | 100 | 60 / 60 | plus | ABC32845 |
| Harvest21 | ABC03696 | 637 | 3e-25 | 536 - 595 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03692 | 671 | 3e-25 | 545 - 604 | 100 | 60 / 60 | plus | ABC03692 |
| Harvest21 | ABC03695 | 673 | 1e-23 | 546 - 605 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_37164 | 466 | 3e-25 | 337 - 396 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15648 | 671 | 3e-25 | 545 - 604 | 100 | 60 / 60 | plus |
Contig Sequence (671 bp)
>U35_15648 671 Hv_44K_v2 CTTTCAAGTAGGAAGAGTAGGAAGATCCCCAATCTCCTCCAGCTCCATCTCGCTCTCACC TTGAGGTGATCATGGAGCTCAACGCCAAAAGAACCACCTCTATCAAGGCACTACTTGTTG AGGACATTGAAGTTTGTAGGCTGGTCCTCTCAACTATATTGCTCGCAATGAACTGTGAGG TTACTCTAGCCGTGAATGGGAAGGAAGCTGTTGAATTGTTCCTTGAGGGGAAGAAGTTTG ACATTGTTTTGTTAGATAAGGACATGCCCATCATGACTGGTCCCGAGGCAGTTGTGAAGA TCCGTGCTATGGGGGAAGGTGATGTGAAGATTGTTGGGGTTTCTGCCGATGACCATGCAA TGGAGGCGTTCATGAATGCTGGTGCTGATGCTTTCGTGCCCAAACCAATGAGGAGGGAGG TTCTCATACCTATCATTCAGGAGATCATCAACAAGAAGAAGAATGCCATGGTCTAGGAAA AGTTAGCTTGCTCAAGTGATGGAGGAAATAATATTGTATAACTTTTTGATCTATGTTTGC TTTACTGCATTGTTGTGTTGCTTGTTCAATTGTGTCATTTGATTGTGAGAACTTCATGTT AATGTCCAAACATAATTATCCACAATAATAAAGTACTTCTGATTATATTTGATCAAAAAA AAAAAAAAAAA
Homology of Contig U35_15648 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |