barSeed - Barley Seed Development Database

Probe CUST_31897_PI390587928

Source Contig U35_15649

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31897_PI390587928	Hv_44K_v2	CATGGTCTAGGACAAGTTAGCTTTCTCAAGTGATGGAGGAAATACTATTGTATAACTTTT	467	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.255	0.237	0.932	1.827	1.373	1.855
Raw	4770.203	6682.987	23772.067	65248.733	19651.643	28923.533

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80463.1	294	2e-24	233 - 292	100	60 / 60	minus	ABC03692 ABC32845
JLOC1	JLOC1_53571.1	254	8e-25	194 - 253	100	60 / 60	minus
Harvest21	ABC03695	673	3e-25	468 - 527	100	60 / 60	plus
Harvest35	U35_15649	673	3e-25	468 - 527	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_15649 673 Hv_44K_v2
GCTTTCAAGTAGGAAGAGTAGGAAGATCCCCAATCTCCTCCAGGTCCATCTCGCTCTCAC
CTTGAGGTGATCATGGAGCTCAAGGCCAAAAAATCCACCTCTATCAAGGCACTACTTGTT
GAGGACATTGAAGTTTGTAGGCTGGTCCTCTCAACTATATTGCTCGCACTGAACTGTGAG
GTTACTCTAGCCGTGAATGGGAAGGAAGCTGTTGAATTGTTCCTTGAGGGGAAGAAGTTT
GATATTGTTTTGTTAGATAAGGACATGCCCATCATGACTGGTCCCGAGGCAGTTGTGAAG
ATCCGTGCTATGGGGGAAGGTGATGTGAAGATTGTTGGGGTTTCTGCCGATGATCATGCA
ATGGAGGCATTCATGAATGCTGGTGCTGATGCTTTCGTGCCCAAACCAATGAGGAGGGAG
GTTCTCATACCTATCATTCAGGAGATCATCAACAAGAAGAAGAATGCCATGGTCTAGGAC
AAGTTAGCTTTCTCAAGTGATGGAGGAAATACTATTGTATAACTTTTTGATCTCTGTTTG
CTTTACTGCATTGNTGNGTTTCTTGTTCAATTGTGTCATTTGATTGTGAGAACTTCATGT
TAATGTCCAAACATAATTATCCATAATAAAAAAGGTGGTGGATGCACCANAAATCCTTGC
AGTGATAGGCAAA

Homology of Contig U35_15649 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None