barSeed - Barley Seed Development Database

Probe CUST_3188_PI390587928

Source Contig U35_10967

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3188_PI390587928	Hv_44K_v2	TGAGCTATATTTCAGCTGGAGGTGTTGTGGCATCAATCCTTGTAGTCATCTGCTTGTGCT	680	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.669	3.751	0.856	0.700	0.909	0.809
Raw	58.679	47.621	9.160	11.040	2.822	2.802

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365354	2120	2e-24	1049 - 1108	100	60 / 60	plus	ABC18853
MLOC	MLOC_56385.4	1261	2e-24	408 - 467	100	60 / 60	plus	ABC18853
MLOC	MLOC_56385.2	2360	2e-24	1148 - 1207	100	60 / 60	plus	ABC18853
MLOC	MLOC_56385.1	2405	2e-24	1550 - 1609	100	60 / 60	plus	ABC18853
JLOC1	JLOC1_36460.1	2309	8e-25	1278 - 1337	100	60 / 60	plus
Harvest21	ABC33834	507	3e-25	302 - 361	100	60 / 60	plus
Harvest35	U35_10967	886	3e-25	681 - 740	100	60 / 60	plus

Contig Sequence (886 bp)

>U35_10967 886 Hv_44K_v2
CACGCGTCCGCTGAAGTCCAACCTGCCACTGTAGTTTTTATATATGAATTTTCTCATGCA
AGGAGTTAACCCGAGTTTACGGTGAGGCTTTACTGTCTGTAACTTATTTCACTTGGATCT
ACAATGGAATTTCTGTTCTGAATGTCTGAACTTTCCCGATGATAAATTTTACTGAACCTG
AAGAATACTTACTATTCCTGGATAAGTATAGAATTCTTGACGACAAAATACTCTGATTAT
TATGTTCAGTGCTCCCATTTCTGTTTAATATGCAGGCATAAATGTTCTTTGTGGTGTCGG
AATCCTGTCAACGCCTTACGCCATCAAGCAAGGCGGGTGGATCGGACTGGTGATACTGAT
TGTATTTGCTCTGCTCGCATGGTACACCGGTGTGCTGCTGCGCCGTTGCCTGGACAGCAA
GGAGGGCCTTCAAACATACCCAGATATCGGTCATGCCGCCTTTGGCACCACCGGACGCAT
AGCCATCTCGATAATCCTGTATGTGGAACTATATGCCTGCTGTATCGAGTATTTGATACT
GGAAAGCGACAATTTATCGAAGTTGTTCCCCAACGTACACCTGAACATTTGGGGCTTGGC
AATAAACTCGCATGTATTCTTCGCAATCTTGACGACTCTTGTGGTCATGCCGACCACTTG
GCTCCGTGACCTTACCTGCCTGAGCTATATTTCAGCTGGAGGTGTTGTGGCATCAATCCT
TGTAGTCATCTGCTTGTGCTGGATTGGGGTTGTCGACCATGTCGGCTTTGAGAACAAAGG
GACTGCGCTAAACCTCCCGGGAATTCCTATCGCAATTGGGCTGTACGGTTACTGCTACTC
GGGCCATGGGGTGTTCCCAAACATCTACTCTTCTCTGAAGAATCGC

Homology of Contig U35_10967 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01100.2	572	1e-133	protein\|transmembrane amino acid transporter protein, putative, expressed
Brachypodium v1_2	Bradi3g00280.1	566	1e-133
Arabidopsis v10	AT2G39130.1	550	8e-101	Transmembrane amino acid transporter family protein \| chr2:16323171-16326744 REVERSE LENGTH=550