barSeed - Barley Seed Development Database

Probe CUST_31887_PI390587928

Source Contig U35_27625

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31887_PI390587928	Hv_44K_v2	CAATCATACCAAGCCTGAGGGAATCGTCTTAAATCATGATTATTATCTGGCCTTTGATCC	602	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5159.2	1206	7e-23	227 - 286	98	59 / 60	plus	ABC15818
MLOC	MLOC_5159.1	1816	7e-23	742 - 801	98	59 / 60	plus	ABC15818
JLOC1	JLOC1_3300.2	1688	4e-23	737 - 796	98	59 / 60	plus
JLOC1	JLOC1_3300.1	1810	4e-23	737 - 796	98	59 / 60	plus
Harvest21	ABC23278	662	3e-25	603 - 662	100	60 / 60	plus
Harvest35	U35_27625	662	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_27625 662 Hv_44K_v2
GCTTTCTCCTCTTCTCCTCCTCCACTCCAGATCCAGCCGGTGAGCAGTGCGGCCGGCTTC
CAATTCCAGCAGGCTTCTTTCTTTGATTCGACCAGCTTCCTGCTCCGGTATGTGTAGGCA
GGCGTGTTGGTATTCCGTTGCCAGTCAAGAGGCCAACATCTAGACGTACATCAGATGGAA
CCACCGGAAGACGGAGACATGACGGCGCGCCTGCCGGAGGACGTGCTCGCCGACGTGCTC
CGCCGCGTGGCGTTGCAGCGCTCGCTCGCCGTGTCCCGCTGCGTGTGCAAAGCGTGGCGT
GCCGTCATCGACGGCGCGGGACTCGTGCGCGGGCAGCTCCCGTTCATCGGCATCTTCATC
TGCTTCAGGAGGCTAAGTCTGCCCGAGTTCTTCTCACGCCCCGCGTCCAGGGATCTGGAT
CAGCCAGCTATCGGCGGCAAGCTCGACTTCCTGCCCAGGGCCGATGGCCCAAGATTGGAC
TGCCACTACTACATCGAGGATCACTGCAATGGACTCCTCTTGCTCCAAGGGAACCGCATC
GATGATCACTACGTGGTTAACCCTGCCACGCGATGGCGGAACGCTCTGCCCTTATGCCCG
CCCAATCATACCAAGCCTGAGGGAATCGTCTTAAATCATGATTATTATCTGGCCTTTGAT
CC

Homology of Contig U35_27625 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None