barSeed - Barley Seed Development Database

Probe CUST_31886_PI390587928

Source Contig U35_27627

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31886_PI390587928	Hv_44K_v2	CCATACTGATGTATTGCTGGGTTTGTTGAAAAAGTGCAGCATTCCCGATCTCTTCATGCG	565	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10967.1	2723	7e-23	866 - 926	98	60 / 61	plus	None
MLOC	MLOC_10967.2	2797	7e-23	866 - 926	98	60 / 61	plus	None
JLOC1	JLOC1_7220.1	2707	4e-23	866 - 926	98	60 / 61	plus
Harvest21	ABC21650	628	3e-25	566 - 625	100	60 / 60	plus
Harvest35	U35_27627	628	3e-25	566 - 625	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_27627 628 Hv_44K_v2
CGTCGCCGGCGCAGAAACAAATCCCGGCGAGCCAGCACCGCGCGCCTGCCGTGGCGAGCT
TCAGGGCCTGGGGGTCTGCACCAGCACCCGAGATGCCGTCCTTCTCCTCCGGCGCTTCCC
CGCAGAAGCAGCAGCATAACGCGCGGAGGAAGCAGCTGATCCGTCAGCAGAGGAAGTCGC
TTCCCATCGCGTCAGTGGAGAAAAGGCTTGTGGATGAGGTGAGGAAGAATGACACGCTGA
TCGTTGTCGGCGAGACCGGTAGCGGCAAAACGACTCAGTTGCCACAGTTTTTGTATGATG
GTGGGTTTTGTCAGGATGGAAAAGTCATTGGCATCACTCAGCCTCGACGAGTTGCAGCTG
TGACAGTAGCAAAGCGTGTCGCCGAGGAATGCAATGATCAGTTGGGCAGAAAGGTTGGAT
ACTCTATAAGATTTGATGATTCCACATCTAATGCAACAAGGATTAAATACATGACCGATG
GTTTACTTCTAAGGGAAGCCCTTTTGGATCCACTCTTGTCTAAGTATAGTGTTGTAATCG
TTGACGAGGCCCACGAAAGAACCGTCCATACTGATGTATTGCTGGGTTTGTTGAAAAAGT
GCAGCATTCCCGATCTCTTCATGCGAAT

Homology of Contig U35_27627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g09280.1	855	1e-85	protein\|ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi4g16730.1	698	1e-85
Arabidopsis v10	AT1G26370.1	717	7e-59	RNA helicase family protein \| chr1:9122030-9125368 REVERSE LENGTH=717