barSeed - Barley Seed Development Database

Probe CUST_31879_PI390587928

Source Contig U35_39609

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31879_PI390587928	Hv_44K_v2	CTGTTTTCCCGCTGCTTTCTGCTAAATCAATGAAACCAGAGCAATCCAGACACTTTCAAA	734	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38117.1	1941	3e-22	666 - 724	98	59 / 60	plus	ABC07040
JLOC1	JLOC1_24757.1	2112	1e-22	1364 - 1422	98	59 / 60	minus
Harvest35	U35_39609	809	3e-25	735 - 794	100	60 / 60	plus

Contig Sequence (809 bp)

>U35_39609 809 Hv_44K_v2
TTATCAAAAAATTTTATGATTGTGAGTCTTTCCCCAATAGTATATAATGATCAAGTGTTG
CTGTTGGACATGGAATACAACGTAATGATAATGGTAATTTATATTCACACAAAAGTTATG
TAGTCTTGGATCCTTCAACATGCGATGCTTGCTTTAGACCCTTTGCTAGCCCAAAACTCC
GCACTAAGTAGAGATACTAGTTGTGCATCCATAACCGTGAAACCCAGTTTGTTTCCATGA
GAGTCCACCATACCTTTGATTTTGTCTCCTCGGACTATCTTTTTGAGCTTCTCCACCGTA
TGGGATTCAGTTCAAGGTGGTGTGCCTGGCTGGCCCTGCTACTCTCGCCGGCCTCTTCCT
CTTGCATGATTAATGGTGTGTGAGGGGACTGGATAACTCATTAGCGAGGGCTGAGACAGG
GGGCTATGTCCCCCTTGCTCTTCATCCTCGTGGTCGACCCACTACACTGGCTTCTTCATG
TTGCAACAGAGCGGGGACTGCTTGCCTCTCTTCCAGGGTGAGGCATTAATATGAGGGTAG
CATCTATGCGGACGATGCAGTGATCTTTGCGAACCCGATCAAGGAAGAGGTTCAATTCTT
GATGAATCTCCTTTCGGGGATAGTAGCAAGATAGCCGACCCTTGATCAGGGCATTTTCTT
TCAATTTTTTCTTCACTTTCTCCTTGGCCTATTGGCCTTTTTGCCTTTTGTTCCATGGAT
CCCTGGGTCCCTCGCTGTTTTCCCGCTGCTTTCTGCTAAATCAATGAAACCAGAGCAATC
CAGACACTTTCAAAAAAATCTTGCAAAAG

Homology of Contig U35_39609 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None