barSeed - Barley Seed Development Database

Probe CUST_31878_PI390587928

Source Contig U35_15650

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31878_PI390587928	Hv_44K_v2	CTTCTGTGATGAACCTGTTTATTCATTCTAAGCCTTATCATCTGTGCTTTAGTTCTCGTG	1468	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66289.3	2879	2e-24	1392 - 1451	100	60 / 60	plus	ABC03694 ABC07678 ABC39688
MLOC	MLOC_66289.2	3896	2e-24	1449 - 1508	100	60 / 60	plus	ABC03694 ABC07678 ABC39688
JLOC1	JLOC1_43667.1	2834	8e-25	1387 - 1446	100	60 / 60	minus
JLOC1	JLOC1_43666.2	3892	8e-25	1499 - 1558	100	60 / 60	plus
Harvest21	ABC03694	1506	3e-25	1430 - 1489	100	60 / 60	plus	ABC03694
Harvest35	U35_15650	1556	3e-25	1469 - 1528	100	60 / 60	plus

Contig Sequence (1556 bp)

>U35_15650 1556 Hv_44K_v2
CCAACTCGAACCTACCCACGGCCTGTCAGAACTCCCGACGCCGTGCGATCCAAGCGAACC
AACCGGAGGGAAGTGCCCTCAACCCAAACGAGCGGCGACGAGATGGACGGAGGCGGTGGC
GGCGGAAGCACCAGCGGCGAGGATGGGAAGCAGGAGAAGCACCTGTTGCTTGCCCACAAG
CTCTTCCTGCTCTCCCACCCCGACGTTGACGACCTCTCCAAGGTCGACATCCGCTCCGAC
GTGCTCTCCGCCGTCAAATCCGATGACATGGCGCCGCTGTTCGAGTCGCTGGCCGCCACG
GGCGTGCTGGAGCCGGACGCCGCACTGCTCGCCGAGATGCGCGCCCGGATCGACGAGGAG
ATCCGCAAGCTCGATGAGAAAATTGCTGATGCTGAAGAGAACTTGGGCGAGAGTGAAGTG
CGTGAAGCCCATCTTGCCAAGTCCTTGTACTTTGTAAAGGTTGGCGAGAAGGAAAAAGCA
CTGGAACAACTTAAAGTTACTGAAGGAAAAACTGTAGCCATTGGCCAGAAGATGGATCTT
GTGTTCTACACTTTGCAAATTGGCCTTTTCTACATGGACTTCGATCTCATCTCAAAATCA
ATTGATAAGGCAAAGAAGTTGTTTGAGGAGGGAGGTGACTGGGAGAGAAAGAACAGATTG
AAAGTGTACGAAGGCCTATACTGCATGGCAACTAGAAACTTCAAGAAAGCTACCAGCCTG
TTTTTGGACTCCATCTCAACTTTCACAACCTATGAGCTGTTTCCATACGACACTTTCATC
TTCTATACAGTCCTCACGAGTATAATCTCATTGGATCGTGTATCTCTAAAGCAAAAGGTG
GTGGATGCACCAGAAATCCTTGCAGTGATAGGCAAAGTACCACACCTCTCAGAGTTTCTT
AACTCCCTGTACAATTGCCAGTACAAGTCATTTTTTGTTGCATTCTCTGGCTTGATGGAA
CAGATCAAGTTAGACCGTTATCTTCAACCTCATTTCCGCTACTACATGAGGGAAGTGCGC
ACTGTCGTCTACTCACAGTTTTTGGAGTCATACAAGAGTGTGACGATGGAAGCTATGGCT
TCTGCATTTGGTGTGACTGTTGATTTCATAGACCAGGAACTTTCTCGTTTTATTGCAGCT
GGCAAGCTTCACTGCAAGATTGACAAGGTCGCTGGTGTTTTGGAGACAAACCGGCCTGAT
GAGAGGAATGCTTTCTACCAGTCGACCATCAAGCAAGGGGACTTCTTGCTGAACCGCATC
CAGAAGCTATCCCGAGTCATTGATCTGTAAAAGTTGCTGTTCTTGTTGGAGCTCTGACCC
AGCAAAGGTTGTGCCCGGTTGTTGGATCTATTTCAGCTAGCCTCCTAGAGGATATGGCCA
GTGCCTGGCTTTGTTGAGCGTGCGAGGAAGAAGTCTTGTATGAATTACTATGAACTCATA
TCCCAGAAGATCAGGCTGAAGGATGTTTCTTCTGTGATGAACCTGTTTATTCATTCTAAG
CCTTATCATCTGTGCTTTAGTTCTCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15650 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g38810.1	389	protein\|26S proteasome non-ATPase regulatory subunit 6, putative, expressed
Brachypodium v1_2	Bradi3g47880.2	394
Arabidopsis v10	AT4G24820.1	387	26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain \| chr4:12790471-12792599 REVERSE LENGTH=387