barSeed - Barley Seed Development Database

Probe CUST_31877_PI390587928

Source Contig U35_15651

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31877_PI390587928	Hv_44K_v2	TCACGTACAAGACCAAGGACTTCGTCAGCTACGAGATGATACCGGGGTACCTGTACCGCG	314	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354338	2273	2e-24	921 - 980	100	60 / 60	plus	ABC04521 ABC13653 ABC46696
MLOC	MLOC_58422.2	2475	3e-21	1365 - 1424	97	58 / 60	minus	ABC03392 ABC04521 ABC13653 ABC46696
MLOC	MLOC_58422.1	2722	3e-21	1390 - 1449	97	58 / 60	minus	ABC03392 ABC04521 ABC13653 ABC46696
JLOC1	JLOC1_37952.1	2458	2e-21	1071 - 1130	97	58 / 60	plus
Harvest21	ABC04523	635	6e-22	315 - 374	97	58 / 60	plus
Harvest35	U35_15651	1187	3e-25	315 - 374	100	60 / 60	plus

Contig Sequence (1187 bp)

>U35_15651 1187 Hv_44K_v2
CGACCACTGGTACGACATCGAGGGCGTCCTCACCGGCTCCATCACGGTGCTCCCCGACGG
CAGGGTCATCCTCCTCTACACCGGCAACACCGAGACCTTCGCGCAGGTGACCTGCCTCGC
AGAGGCCGCCGACCCAAGCGACCCCCTCCTCCGCGAATGGGTGAAGCACCCGGCCAACCC
CGTCGTGTTCCCGCCGCCCGGCATCGGCATGAAGGACTACCGCGACCCAACGACGGCGTG
GTTCGACAGCTCCGACAACACGTGGCGCATCATCATCGGGTCCAAGAACGACTCCGACCA
CTCCGGCGTCGTCTTCACGTACAAGACCAAGGACTTCGTCAGCTACGAGATGATACCGGG
GTACCTGTACCGCGGCCTCGCCGGCACCGGCATGTACGAGTGCATCGACATGTACGCCGT
GGGCGGCGGCCGCAAGGCCAGCGACATGTACAACTCGACGGCGGAGGGCGTGCTGTACGT
ACTGAAAGAGAGCAGCGACGACGACCGGCGCGACTATTACGCGCTCGGGAGGTTCGACGC
GGCGGCCAACACATGGACGCCGATCGACGCCGGGCTGGAGCTCGGTGTCGCGCTCCGGTA
CGACTATGGCAGGTACGACGCGTCCAAGTCCTTCTACGACCCCGTGAAGCAGCGGCGGAT
CGTGTGGGGGTACGTCGTCGAGACCGACTCCTGGACCGCCGACGCCGCCAAGGGCTGGGC
CAACCTCCAGTCGATTCCGAGGACGGTGGAGCTTGACGAGAAGACACGGGCGAACCTCAT
CCAATGGCCGGTGGAGGAGCTCGACACCCTCCGCATCAACACCACCGATCTGAGCGGCAT
CACTGTCGGCGCCGGCTCTGTCGTCTCCCTCCCCCTCCACCAGACCTCCCAACTCGACAT
CGAGGCATCCTTCCGCCTCAACGCCTCAACAATTGAGGCCCTCAACGAGGCCGACGTCGG
CTACAACTGCACCACCAACGGCGGCGCTGCCACCCGCGGCGCACTTGGCCCCTTCGGCAT
TCTCGTCCTCGCCAACGCCGCCCTGACCGAACAGACGGCGGTGTACTTTTATGTGTCCAA
GGGCCTCGACGGCGGCCTTCGAACGCACTTCTGCCACGATGAGTTGCGGTCGTCGCATGC
TACCGATGTGGCGAAGGAGGTGGTGGGTAGCACGGTGCCGGTGCTCG

Homology of Contig U35_15651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01590.1	663	3e-171	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi1g52210.1	613	3e-180
Arabidopsis v10	AT1G62660.1	648	4e-124	Glycosyl hydrolases family 32 protein \| chr1:23199949-23203515 FORWARD LENGTH=648