barSeed - Barley Seed Development Database

Probe CUST_31864_PI390587928

Source Contig U35_27631

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31864_PI390587928	Hv_44K_v2	GTAAGGGTATATTGTACATCAATGAAGTGATGAAGCGCAAGTGATGAATGGAACACAATA	504	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10317.2	994	2e-24	685 - 744	100	60 / 60	plus	ABC19982 ABC26419
MLOC	MLOC_10317.1	993	2e-24	680 - 739	100	60 / 60	plus	ABC19982 ABC26419
JLOC1	JLOC1_6746.1	1058	8e-25	688 - 747	100	60 / 60	plus
Harvest21	ABC26419	580	3e-25	505 - 564	100	60 / 60	plus	ABC26419
Harvest35	U35_27631	580	3e-25	505 - 564	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_27631 580 Hv_44K_v2
GCACACATGAGTGGACGTTCGAATTTGAAAAAATCCCATGTGCAAAACACGCATGGGCCG
GGCGTGCCAACTAGACCATTATAAGCCTAGAGCGGTCCAGCCCACTTAAGAACGTGCCCT
CTTCTTCTGCGGCTTCGCCTCTGTCCCCGAGCGACGGCGTAGGCACACCGGCACCTCGGA
CGCCAACTCATTGGTACCTCGGCGCCGAACACGCCCCTCAGCTTTCCAAAGGGCGAACCA
TTTCCTCCAGCCTGCAAATGGAATCAAAGTTTTTCCGATTTCTAAAGCTCGTTGGAGTTG
GCTTCAAAGCAAGGACAGAGTGTGAAGGCCGGGAGCTGTTCCTGAAGATGGGCTACAGCC
ATGAGGTGCAGTTCACCGCTCCACCCGCTGTCCGCGTCTTATGCTTCAAGCCCAACATTG
TGTGCTGCACCGGCTTGGACAAGGACAGAGTGCACCACTTCGCCGGCGCCGGCCGAAACT
GCAAACCGCCGGAGGTGTACAAGGGTAAGGGTATATTGTACATCAATGAAGTGATGAAGC
GCAAGTGATGAATGGAACACAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_27631 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51510.1	104	4e-55	protein\|ribosomal protein L6, putative, expressed
Brachypodium v1_2	Bradi4g05970.3	112	5e-61
Arabidopsis v10	None