barSeed - Barley Seed Development Database

Probe CUST_31863_PI390587928

Source Contig U35_41925

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31863_PI390587928	Hv_44K_v2	ATGTTTATGTAAATGGAGTCGTCGTAAAGGTCAAGTACTGCGACACCTGCATGCTGTATC	385	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.286	0.589	1.757	2.357	1.054	1.006
Raw	4.801	16.947	46.131	96.725	15.337	15.939

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376458	2007	2e-24	738 - 797	100	60 / 60	plus	ABC03847
MLOC	MLOC_67204.1	3171	2e-24	1878 - 1937	100	60 / 60	minus	ABC03847
MLOC	MLOC_67204.2	2435	2e-24	1112 - 1171	100	60 / 60	minus	ABC03847
JLOC1	JLOC1_44343.1	2389	8e-25	612 - 671	100	60 / 60	plus
Harvest21	ABC37227	445	3e-25	386 - 445	100	60 / 60	plus
Harvest21	ABC03847	1873	3e-25	507 - 566	100	60 / 60	plus	ABC03847
Harvest35	U35_41925	445	3e-25	386 - 445	100	60 / 60	plus
Harvest35	U35_2440	1873	3e-25	507 - 566	100	60 / 60	plus

Contig Sequence (445 bp)

>U35_41925 445 Hv_44K_v2
GGCGGCCTAGCGGTCCGTGCTCGCCCGAGTCGCAGCAGCAGCAGGAGAACTCATCGTCGT
CGTCTCGCGGGTGGCGGCGGGGATGTACGTGCCGCAGTCGTCCCGCGGCGGGGGCGGCTC
CGCCGGGGAGCAGCCTAGGGTTTACCAAGTCTGGCGGGGAAGCAACGAGTTTCTCTTGCA
AGGGCGGTTCATATTTGGACCTGATTTATGGTTGTAGTGGTTGTCTTCACAGTATATGAT
TTGACGCTGCTGCTTCTTACCTCTGGTAGAGATCCTGGTATAGTGCCTCGTAACACCCAC
CCCCCCGAACCTGAAGCCCATGATGTGAACAATGATACTGGAAATGGTCAGACTCCACAA
CAATTGCGCTTACCACGGACAAAGGATGTTTATGTAAATGGAGTCGTCGTAAAGGTCAAG
TACTGCGACACCTGCATGCTGTATC

Homology of Contig U35_41925 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None