barSeed - Barley Seed Development Database

Probe CUST_31860_PI390587928

Source Contig U35_27633

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31860_PI390587928	Hv_44K_v2	CCTGACGACATCGTCCAAGGGCTTCACTTTCCCCTGCTTAAGCAGCTCGGGCTTGATACT	649	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.856	1.271	2.207	2.074	0.806	0.725
Raw	6.749	17.265	26.213	37.887	4.128	3.904

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72421.2	1715	2e-24	847 - 906	100	60 / 60	plus	ABC24315
MLOC	MLOC_72421.1	2578	2e-24	854 - 913	100	60 / 60	plus	ABC24315
JLOC1	JLOC1_48163.1	2724	8e-25	854 - 913	100	60 / 60	plus
Harvest21	ABC22262	709	3e-25	650 - 709	100	60 / 60	plus
Harvest35	U35_27633	709	3e-25	650 - 709	100	60 / 60	plus

Contig Sequence (709 bp)

>U35_27633 709 Hv_44K_v2
GCGCCAGCCGCCTCCGCCGGCCAAGGAGACGAAGGCGGACGGTTCCGGTCCTAATACTTC
CAAGAAGAGGAAGCTAGCGGGACACCAGCGCCGTGAACAGGTGCCGACGGCAGCAGTGGG
CCTGGTCATCCACGAAGAGGTTCTAGCACCGCCGGCGGGGGCGCCAGATCCGAAATCTAG
GTCGACGGACAAACCGCCCGCCGGAGGGGAGGTAGACGGAGGAGCCGTCGACCGCATCAG
CAACCTCCACGACGATAACCTCCGCCACATCGTCTCCCTCCTCCCCGTCAAGGACGGCGC
CCGCACCCAGATCCTCGCGTCCCGGTGGCGCCACGTCTGGCGCTCCGCCCCTCTGAATCT
AGACTACCGTGAGTTCCCCTCCGGCTGCTTGCCCCCTTACAACGACACCCGCATTGCCGT
CATCTCGCACATCCTTTCCTCCCACCCGGGGCCCGGCCGCCGCTTCTGCATCGAACCGCG
CTTCCTCCGCGCCGCGGAAGCTACCCTCGACGCCTGGCTCCGGTCCGCCGCTCTGGACAA
ATTGCAGGAGCTTGAGACCGGCTCTACTGTATGGATTACCCCGATGCCAGCGTCCACATT
CCGCTTCTCGGCCACCCTCTGTGTTGCCACCTTGAGAAAATGCAGCCTCCCTGACGACAT
CGTCCAAGGGCTTCACTTTCCCCTGCTTAAGCAGCTCGGGCTTGATACT

Homology of Contig U35_27633 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None